Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01154 ATGGATTTTTCAACAGGAGACGTTGGTGGGTCTAGTGATGAAGACACTCAGAACTCACACATGGAAAAAAAATCCTCTCACAGTCGTTTCAGTATCGCACAAACAACTGTACTTGAAAATTTCTTCAAGGAATGCCCAATTCCAGATACAGCTCGACAACGTCAATTGGCTGATGAGGTTGGACTTGAACCCAAACAAATTAAGTTTTGGTTTCAGAACAAGAGGACTCAAACAAAGGTTCAACGCAAGCGAGAAAATAATACTACTCTTCTACTTGAGAAGGATAGGATGCTTAACGAAAACCTCCAAATGAAAGAGGTAATAGAGAATATAATTTGCCAAGATTGTGGGGGTCCACCGTTACTTGAAGAAGAGCATGAAAGTTTCATGCGACAAATGCAACTTCAAAATACAATGCTAAAAGAAGAGCATGGGAAAGTGTGTGACCTTCTTGAAAGGTACTTAGAGAAATATATGTCAACACCTAGGTTGCAGCAAGTTCCAATTCCTATCACTGAATCTTCTTCACATGAGCCAGCACTCAATGGAAGTTCAAGTACATCTCTTGATCAAAGTCTTGGTTTTCACAACCCAATGGAAATTTCTATTATGGAAAAAGCATTGATGTCTGAGATCGCAACTTCTGCAATGGAAGAACTAGTTAAACTTTTGCGCATTAATGAGCCTTTCTGGGTCAACTCATCAGCTCAAGATGGGAAACTCACCCTTCATCGTGAAACTTATGAAAAAATTTTCCCTCAGACTAATCACAAGAAAGGTGAAAATGTGCATCTAGAATCATCAAAAGATTCAGGAGTAATGAACATTAGGAGCAAGGAATTAGTTGATATATTTCTAGATGCGGAAAAATGGACAGACTGCTTTCCAACAATTGTTACAAAAGCAGAAACAATCAAAATATTTGAAAATGGTTTGATGGAAAATCGAAGTGGAGCCTTGCACTTGATGTATGAAAAATTACATGTTCTTTCACCTTTAGTGCGGCCTCGTGAATTTTACTTCCTTCGCTATTGTCAACAAGTTGACACTGGGGTGTGGGTGATAACAGATATATCTTATAACTCTTTTCGAGTTAGCTCCTCCCCTCTTTATCGTTCTTGGAGATACCCTTCTGGATGCATGATTCGTGAAATCTCTAATGGGTGTTGCAAGCTCACATGGGTTGAGCATGTGGAAGTGGAAGATGAGATTCATACCCAACAACTATATAGAGATCTTGTTGGCATCAATATTGATTATGGAGCAAGAAGATGGATATTGGAACTTCAAAGAATGTGTGGGAGATTTGCTTCCTTTCATGTTAAAAAGATACCTTATCAAGACTTTGGAGGAGTGATTGATTCACTTGAAGGGAGGAAGGCTGTAATGAAGTTTTCTCATCAAATGGTTAAAACATTCTGTGAAAGTTTAACCATGTCAAGTCATGAGCCAGACTTCCCATATTTAACTGTGGGAAATAATAATGGGGTTAGGGTCAATGTTCGCAAAAGCATGGGCATAGGCCAACCAAATGGAACAGTTGTTATGGCTTCTACCTCCTTTTGGCTTCCTCTCCATTATGAGAAAGTTTTTGAGTTTCTCATAGATCACAAAAGACGAGCTCAGTGGGATGTTCTTGCAAGTGGAAATCCAATGCATTTGGTTGCACACATTTCAAATGGAATTCATCTTGACAACTGCATTTCAATTATTCAGTCATTCATCCCTAGTGAGAACGACGTCGTGATTCTTCAAGAAAGCTTTACACACCCCATGGGATCGTATGTTGTATATGCTCAAACTAATTTAGCAGCAATGAATTTAGCTATAAGGAGTGAAGATTCTTCTATGTTATCAATTCTTCCATCAGGTTTTGTCGTCTCTCCAAATGGCCAACCAAAAGAAACTTTGGAAGCAATTATTAGTAAAAATGTTGATAGATCAAGAGGCTCGTTATTAACTGTGCTTTTCCAGGTATTGGATAGTAGTCCAGATGGGAGCAAGCTTCTGAATATGAAATTTGTTACATCTTTCAACACTCTTTTAACCTCAACAGTTGAAAAAGTGAAGGAAGCTCTGAACTTTAATACTGCGGAGTAG 2100 0.3838 MDFSTGDVGGSSDEDTQNSHMEKKSSHSRFSIAQTTVLENFFKECPIPDTARQRQLADEVGLEPKQIKFWFQNKRTQTKVQRKRENNTTLLLEKDRMLNENLQMKEVIENIICQDCGGPPLLEEEHESFMRQMQLQNTMLKEEHGKVCDLLERYLEKYMSTPRLQQVPIPITESSSHEPALNGSSSTSLDQSLGFHNPMEISIMEKALMSEIATSAMEELVKLLRINEPFWVNSSAQDGKLTLHRETYEKIFPQTNHKKGENVHLESSKDSGVMNIRSKELVDIFLDAEKWTDCFPTIVTKAETIKIFENGLMENRSGALHLMYEKLHVLSPLVRPREFYFLRYCQQVDTGVWVITDISYNSFRVSSSPLYRSWRYPSGCMIREISNGCCKLTWVEHVEVEDEIHTQQLYRDLVGINIDYGARRWILELQRMCGRFASFHVKKIPYQDFGGVIDSLEGRKAVMKFSHQMVKTFCESLTMSSHEPDFPYLTVGNNNGVRVNVRKSMGIGQPNGTVVMASTSFWLPLHYEKVFEFLIDHKRRAQWDVLASGNPMHLVAHISNGIHLDNCISIIQSFIPSENDVVILQESFTHPMGSYVVYAQTNLAAMNLAIRSEDSSMLSILPSGFVVSPNGQPKETLEAIISKNVDRSRGSLLTVLFQVLDSSPDGSKLLNMKFVTSFNTLLTSTVEKVKEALNFNTAE. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01154 699 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Seca4g01154 699 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Seca4g01154 699 CDD homeodomain 24 82 IPR001356 GO:0003677
Seca4g01154 699 Pfam START domain 212 433 IPR002913 GO:0008289
Seca4g01154 699 SMART START_1 211 435 IPR002913 GO:0008289
Seca4g01154 699 MobiDBLite consensus disorder prediction 1 29 - -
Seca4g01154 699 ProSiteProfiles START domain profile. 202 438 IPR002913 GO:0008289
Seca4g01154 699 Gene3D - 209 412 IPR023393 -
Seca4g01154 699 CDD START_ArGLABRA2_like 206 433 - -
Seca4g01154 699 SMART HOX_1 23 85 IPR001356 GO:0003677
Seca4g01154 699 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Seca4g01154 699 Gene3D - 10 93 - -
Seca4g01154 699 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 694 IPR042160 -
Seca4g01154 699 SUPERFAMILY Bet v1-like 204 435 - -
Seca4g01154 699 SUPERFAMILY Homeodomain-like 17 85 IPR009057 -
Seca4g01154 699 SUPERFAMILY Bet v1-like 459 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01154 Seca-Chr4 18491155 18495840 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01154 23 698 Homeobox Transcription Factor Family AT1G73360 40.057 7.89e-173 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g01154 START 1.4e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01154 K09338 - gmx:100795075 818.15