Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01147 ATGGCTGCTCCAAACTCTTCCATTAACAACTACCAGCTGCATCATTCCGTCAATGTCCAAGGAACACAGAATGTCATCGATGCTTGTGTCGAGCTAAAAGTGAAGCGACTCATTTACACCAGCTCTCCCAGCGTCGTATTTGATGGAGTTCATGGAATTCATAACGGAAACGAATTATTGCCCTATCCACCTTCGCATAATGATCATTATTCAGCTACTAAAGCCGAGGGTGAGGCATTGATTAAAAAGGCCAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGTAGCATTTTTGGACCCGGTGATAAACTTTTGGTGCCTTCATTAGTTGATGCTGCCAGGGCAGGGAAATCCAAGTTCATTATTGGTGATGGCAATAACCTTTATGATTTCACTTATGTTGAAAATGTGGCCCATGCCCATATTTGTGCTGAACGAGCTCTTGCATCTGGGGGAACAGTTTCAGACAAAGCTGCAGGAGAGGCATATTTCATCACAAATATGGAACCTATAAAGTTTTGGGAGTTCATGTCACTGATTTTGGAAGGTCTTGGATATGAAAGGCCAAAAATAAAGATCCCTGCCTTTGTTATCATGCCAATTGCACATTTGGTGGAGTGGATATATAAGCTTCTGGGCCCATATGGAATGAAAGTGCCTCAGTTGACCCCTTCAAGAATAAGACTCCTGTCTTGCAGTAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCGTAACACTACAGGAGGGTCTGCGGAGGACAATTGAATCATACCCACACTTAAGGGCTGAAAATCAACCAAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCTGACACACTGCTTTGGAAGGATAGAAAGCAAACTTTCACTACGTTGTTAGTCCTGATTGCAATATACGTAAACTTCATTGCATCTAAGAACACCATTATTACTGCTCTTACAAAGCTTCTATTGTTCACAACGATCTTTTTATTCATTCACGGCATTCTACCTACAAAAGTATTGGGGTATACTGTTGAGAAAATGCCCACATCATGGTTTCACTTATCAGAAGATATGTCACATAAAATCGTTCTATCAGTGGCCTCATCATGGAATTTTGCTGTGAATGTCTTGAAATCTCTGGCAGAAGGGAATAATTGGGTGCTGTTTTTAAAGGTTGCTTTCTCTCTGCTCATTCTTAGCTTCCTTGGAGCCTTTTCGCTTCAGAACTTATATACTATAGGACTTACCTTTGCGTTTATAGCTTTCTACGTTTATGAAAAGAAGGAGGAAGACATTGATGGCATATTTATAAAAATACATTCTTTTGGATGCAAATTGAAATCTGATCTCACCAGGAAGTTTCTTCCTTCAAAGAAGATTGATTGA 1428 0.4076 MAAPNSSINNYQLHHSVNVQGTQNVIDACVELKVKRLIYTSSPSVVFDGVHGIHNGNELLPYPPSHNDHYSATKAEGEALIKKANGTNGLLTCCIRPSSIFGPGDKLLVPSLVDAARAGKSKFIIGDGNNLYDFTYVENVAHAHICAERALASGGTVSDKAAGEAYFITNMEPIKFWEFMSLILEGLGYERPKIKIPAFVIMPIAHLVEWIYKLLGPYGMKVPQLTPSRIRLLSCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESYPHLRAENQPKTKREGPSKASIYLGSGRVADTLLWKDRKQTFTTLLVLIAIYVNFIASKNTIITALTKLLLFTTIFLFIHGILPTKVLGYTVEKMPTSWFHLSEDMSHKIVLSVASSWNFAVNVLKSLAEGNNWVLFLKVAFSLLILSFLGAFSLQNLYTIGLTFAFIAFYVYEKKEEDIDGIFIKIHSFGCKLKSDLTRKFLPSKKID. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01147 475 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 197 IPR002225 GO:0003854|GO:0006694|GO:0016616
Seca4g01147 475 Gene3D - 1 271 - -
Seca4g01147 475 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 2 266 - -
Seca4g01147 475 Pfam Reticulon 295 450 IPR003388 -
Seca4g01147 475 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 267 IPR036291 -
Seca4g01147 475 ProSiteProfiles Reticulon domain profile. 295 447 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01147 Seca-Chr4 18361364 18368463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01147 16 284 Lipid Metabolism Gene Families AT2G33630 33.451 3.29e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01147 K23558 - gmx:100799363 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01147 4 18361364 18368463 Seca4g01147 4 18361364 18368463 ECH