Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01141 ATGGACAAACATGCCATGGTTGGTGCTGGTGCTACAATTGATCACACTCTATCATCTTCACCTTCTGGTGTTAATAATGATAACAACAAGTTGTACAAAGGTGTGAGAAAGAGAAAGTGGGGCAAATGGGTTTCTGAAATAAGGCTTCCGAATAGCCGTGAACGCATATGGCTGGGGTCTTATGACTCACCTGAGAAGGCTGCGAGGGCCTTTGATGCTGCCCTTTATTGTCTACGTGGTCGCCATGCCAGTTTCAATTTCCCTGATACACCTTTCAATTTGGACATCAATGTAGCTGCAGCTGGTGATCAATCCCTTACCCCACAGAAGATTCAAGAGGTTGCTGCTAGGTTTGCCAACGAGGACCCACAAATGTTGCAACTTGTTGATCACAATAATGGTAATGGACAACCTCAAGGTAATTCTTCATTTGGATCCAAGTCCCACATCGAAAAAAGTGAGAGTAGTACTTGTTGTTATACGACCGCGTCGCCATCGTCTACTCCTAGTACTAGTATAATGGAGCATGGGGACATGAATACAATTGATTGGACATTTTTGAATGTGTTGGATGACTCAAGTGAGGTTCTTGTTGGATCTAATGATTATGGCCTCTATTCTGAGATAGATGACAAGATCCACTCGGGTGAGTTATTGTATTCCACTCCACCCCCATTTCAGGAAGAAGAAGAAATTGAATTAGGTGATGGTGATCCTTTTTCTCATCAATCATTCCTTTGGAATTGGAACTTTTGA 756 0.4272 MDKHAMVGAGATIDHTLSSSPSGVNNDNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHASFNFPDTPFNLDINVAAAGDQSLTPQKIQEVAARFANEDPQMLQLVDHNNGNGQPQGNSSFGSKSHIEKSESSTCCYTTASPSSTPSTSIMEHGDMNTIDWTFLNVLDDSSEVLVGSNDYGLYSEIDDKIHSGELLYSTPPPFQEEEEIELGDGDPFSHQSFLWNWNF. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01141 251 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Seca4g01141 251 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 175 - -
Seca4g01141 251 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Seca4g01141 251 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Seca4g01141 251 FunFam Ethylene-responsive transcription factor 2 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01141 Seca-Chr4 18314096 18314851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01141 32 120 AP2-EREBP Transcription Factor Family AT1G19210 73.034 4.17e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g01141 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01141 - - gmx:100817386 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01141 4 18314096 18314851 Seca4g01141 4 18314096 18314851 ECH