Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01140 ATGGGGAAGAACTCATTGATGAAGCGATCTATCATCGAGGATGCTCACAAAATTGGGAATAAAACCTTCCTTAACCTAGTTCCCCTCCTTGTGGGGAACGTGGCATTGATTTTCACCAAAGGGGACTTGAGGGAGGTTAGTGAACGGATTGCCAAGTACAAGGTAAGGCTGCTGAAATGGAAGTGGTTGTTGTACCATCACTTCCAAAGTAGTCTCATCTCTAGCTATACTGCAGCAGATGAGGGTGGGGGGAACTTTGCCCATAAATCCTTGGTATATTGGTGGTCCTGTCATCAAGGGATTTGGTCGTGGCTTGAAGGTACTGGGGATCCCCACAGGTTTGTTTCCCCACTTCTTGCTTGTGTGATATGA 372 0.4677 MGKNSLMKRSIIEDAHKIGNKTFLNLVPLLVGNVALIFTKGDLREVSERIAKYKVRLLKWKWLLYHHFQSSLISSYTAADEGGGNFAHKSLVYWWSCHQGIWSWLEGTGDPHRFVSPLLACVI. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01140 123 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 56 - -
Seca4g01140 123 Pfam Ribosomal protein L10 1 53 IPR001790 -
Seca4g01140 123 Gene3D - 1 81 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01140 Seca-Chr4 18306842 18308927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01140 1 55 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 69.091 3.40e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01140 K02941 - nnu:104590633 86.2705