Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01139 ATGAGTGGGGTGGTTGGAACACCGTATTACGTGGCGCCGGAGGTTCTAATGAGAAGGGATTATAACAAGAAGGTTGATGTTTGGAGTTGTGGTGTGATCTTTGAAGCCGTTGTTAGGGCTAATCTATGGTTTCCTTATAGAATCTTCCAATCTGTTTCCCCTGCTGCTAAGGATCTCTTGCGCAAGATGATCTGCAGGGATGCTTCCACGAGAATATCTGCAGAGCAAGCCTTAAGTATGTTGCTTCTTCTTTTTGTTCTTCTTCTTCTTCATCTTCTTCGTTTTTGA 288 0.434 MSGVVGTPYYVAPEVLMRRDYNKKVDVWSCGVIFEAVVRANLWFPYRIFQSVSPAAKDLLRKMICRDASTRISAEQALSMLLLLFVLLLLHLLRF. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01139 95 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 79 - -
Seca4g01139 95 Gene3D Transferase(Phosphotransferase) domain 1 1 84 - -
Seca4g01139 95 Pfam Protein kinase domain 3 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01139 95 ProSiteProfiles Protein kinase domain profile. 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01139 95 SUPERFAMILY Protein kinase-like (PK-like) 2 80 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01139 Seca-Chr4 18272972 18273312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01139 2 78 EF-hand Containing Proteins AT5G04870 42.708 3.04e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g01139 Pkinase 2.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01139 - K08794 gmx:548089 122.094