Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01128 ATGGAGATTGAAGTTCTCCCTTCAATGTGGCCTGAAGATATTGTAACCGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGAGATCAAGATATGTTAGAAGAGGTTACAATCATAGAAGAGCCAACAATAGTTGATTTCAAGCGTCTCATGGAGCTGACAAGTTTCACAGAGAAAGGTTCTTCTCAATTAGCATACCTTATGAAACACTGGGAGTATAAACAAGCCAATGTTGTGCGTCTTCTAAGGGAAGAACTCGATAACCTAAGCAAACAGAGAGAGGATGTTGAGTTAAGGAAATTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGTGGTGATAAACGTCCAGTTTCTATATTGGATGATATTTATGATATATGGCAAGATGTACCATGCAGGAAAAGTGATGTTGTGGTTCAAAACAAGAGGATTGAAATTGAGGAGGAGTATGATACTGTTGTGTATTGGAAACAGCGAGCACTGCACTTAGAAAAGTTGTTGGAGGCGAGTATTCAGAGAGAACAGATACTTGAAGAGAAGTTACATGAAAGTATAGAGAATATTGAAAGACAATCCTCACCTGTGGAAGAACTCTCTCAGATCCTTAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAACCATTTTCCAAGTTTACAAGAGGAGGACATTATAGGAAAAACGGATGTTGAAATATTCACAGGATCTGGTGTTAGGGAATCTCAAGATTTCAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAGCTATTTGGGTCAAAGACATTTTTAATATATGTAGAGCCTGTCTTCAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAATTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCTAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAACTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAACTACCAAATTTCGTCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCCATCGAGGTCATTGGTGATGTTTTAAGGATTCGGCAAATTCTCACAAATTTAATCAGCAATGGCATCAAGTTTACTCATGAAGGCAAAGTTGGGATAAATCTTTATGTTGTGCAAGAGCCAACTTTTGCAAAAGCAGAAGGCATCCAAAAGATGACTCAAGACCATTCAACTATTTCAGTGAATGGAGTGAAAGAAGAAAAATATCTCTCAACACATCAAAGTGGCAGTGATCGAAATCTTCCTGATGGTCAAAAACATGATGATCATCCCAGGCAAAACCATGTATTTAATGATGAATGTAGATCTCCTGTTAAAAGCGAATGCTCAATGAACGGAGACACTGAGGAGCAACATCATTCAAATGAAACAACAGTGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAACGCTATACCAACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGTTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTAGTCTCACAGTGTCTAGCAAAGAACATCATGGTTCTACCTTCACGTTCATACTCCCATACAAGGTTTCCATAGCTTGTGATAATTCTGATGATTCAGATGAGCTCTCAGACGTGGAGAATAATGATGCCAGGCCTGATGATACAACAGAGGGTTTCTTCCAATTCCAACCACCCACTTTGGGCTCTTTGTTCTCTAATGGATCTAGTAGGACTCAGAAGTTATTACCACACAAAATTGGCTACACAAGCTCACATAAATTTAATGGGTTTTTAGAGAGTTCATCTTTATTCCCCTTTAATGACATCATATCAAAAGGGACATGTTCAGTTGATGACGCTTCTTCAGTGGTTGATGCTCCAGAGATGTCTGAATCAGCTAGCTCATCTGGTTACAGCTCAGAAACAAAGGACAGATGTTCAGTTAGAAGAGACAAACAACATCTATATAAGGCTCATGCTTGGTCCCAAGATGGTGGTGCAGTTTCTTCTCAACCTACAGTGGCAAATAGGGAAATGGCACTAGCAATGAAGTCAAGTGAACCCCAACAAACATGTCAGGATCGAGGAAAGACAAACACAACTAGCCAGTGTGTTACTAGCAGCAGTATATCAGATGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAAATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAGCATAGATGTTGTAAATAATGGGGCAGAAGCAGTACGTGCAGTTCAGCGCCATACTTATGATCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGCATCGAGCAAAGTTTACCAGATCCAGATTATGAATGTTCTGTACCATCTACAAAGCGTATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGATTCCTTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTCAACAATTCCTAAGGTGA 3012 0.3961 MEIEVLPSMWPEDIVTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTSFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQREDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQDVPCRKSDVVVQNKRIEIEEEYDTVVYWKQRALHLEKLLEASIQREQILEEKLHESIENIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVRHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRIRQILTNLISNGIKFTHEGKVGINLYVVQEPTFAKAEGIQKMTQDHSTISVNGVKEEKYLSTHQSGSDRNLPDGQKHDDHPRQNHVFNDECRSPVKSECSMNGDTEEQHHSNETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGSLTVSSKEHHGSTFTFILPYKVSIACDNSDDSDELSDVENNDARPDDTTEGFFQFQPPTLGSLFSNGSSRTQKLLPHKIGYTSSHKFNGFLESSSLFPFNDIISKGTCSVDDASSVVDAPEMSESASSSGYSSETKDRCSVRRDKQHLYKAHAWSQDGGAVSSQPTVANREMALAMKSSEPQQTCQDRGKTNTTSQCVTSSSISDVTKSTLKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGAEAVRAVQRHTYDLVLMDVCMPVMNGLQATKLIRSFEETGNWDAARNAGIEQSLPDPDYECSVPSTKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLQQFLR. 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01128 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 38 1002 - -
Seca4g01128 1003 CDD HisKA 358 420 IPR003661 GO:0000155|GO:0007165
Seca4g01128 1003 CDD REC_hyHK_CKI1_RcsC-like 860 998 - -
Seca4g01128 1003 ProSiteProfiles Response regulatory domain profile. 859 1002 IPR001789 GO:0000160
Seca4g01128 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 665 IPR003594 -
Seca4g01128 1003 CDD HATPase_EvgS-ArcB-TorS-like 475 664 - -
Seca4g01128 1003 PRINTS Bacterial sensor protein C-terminal signature 627 645 IPR004358 GO:0016310|GO:0016772
Seca4g01128 1003 PRINTS Bacterial sensor protein C-terminal signature 592 606 IPR004358 GO:0016310|GO:0016772
Seca4g01128 1003 PRINTS Bacterial sensor protein C-terminal signature 651 664 IPR004358 GO:0016310|GO:0016772
Seca4g01128 1003 SMART HisKA_10 359 424 IPR003661 GO:0000155|GO:0007165
Seca4g01128 1003 Coils Coil 176 196 - -
Seca4g01128 1003 FunFam Histidine kinase 5 201 336 - -
Seca4g01128 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 358 424 IPR036097 GO:0000155|GO:0007165
Seca4g01128 1003 Gene3D - 852 1003 - -
Seca4g01128 1003 MobiDBLite consensus disorder prediction 533 584 - -
Seca4g01128 1003 FunFam Probable histidine kinase 1 558 670 - -
Seca4g01128 1003 ProSiteProfiles Histidine kinase domain profile. 366 667 IPR005467 -
Seca4g01128 1003 Gene3D - 423 670 IPR036890 -
Seca4g01128 1003 SMART HKATPase_4 470 667 IPR003594 -
Seca4g01128 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 413 665 IPR036890 -
Seca4g01128 1003 Coils Coil 80 107 - -
Seca4g01128 1003 FunFam Putative histidine kinase 5 347 424 - -
Seca4g01128 1003 MobiDBLite consensus disorder prediction 544 566 - -
Seca4g01128 1003 MobiDBLite consensus disorder prediction 676 703 - -
Seca4g01128 1003 SMART REC_2 858 998 IPR001789 GO:0000160
Seca4g01128 1003 Gene3D - 324 422 - -
Seca4g01128 1003 SUPERFAMILY CheY-like 858 1003 IPR011006 -
Seca4g01128 1003 MobiDBLite consensus disorder prediction 821 841 - -
Seca4g01128 1003 Pfam Response regulator receiver domain 860 927 IPR001789 GO:0000160
Seca4g01128 1003 FunFam Histidine kinase 5 852 1003 - -
Seca4g01128 1003 Pfam His Kinase A (phospho-acceptor) domain 361 424 IPR003661 GO:0000155|GO:0007165
Seca4g01128 1003 Gene3D PAS domain 191 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01128 Seca-Chr4 18148306 18154019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01128 1 530 Histidine Kinase Gene Family AT5G10720 68.679 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g01128 HATPase_c 7.7e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01128 - - gmx:100819520 1687.55