Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01127 ATGGAGAAGCAACGCCCAAAACTAATTCATGCCTTGATCTTATATTGGTCTCTATATTCCTACGTGAGCATGGCACAAACAGTCCCAGTGAAAGTAGGAATTGTGGTTGATGTTGGAGGAATATATGGGAAGATGGGTTTGAGTTGCATCAACATGGCCATCTCTGATTTCTATCAAAAACATTCTCATTACCATACCCGCCTTCTCTTCAACGTCAGGGACTCACAAGGAGATGTTGTTACTGCTGCTGCTCAAGCTCTAGATCTAATAAAAAATGAGGAAGTGGAAGCCATAATAGGGCCAATAACATCAATGGAGGCCAACTTTGTGATCAAGCTTGGAGAGAAAACTCATGTCCCCATCATAACATTTTCAGCCACAAGTCCTTCACTAACCTCTCTAAGGAGCCAATATTCATTTCGTATATCACAAAATGATTCATCTCAAGTAAATGCCATAACCTCAATTGTTCAAGCTTTTGGGTGGAAAGCAATAGTTCCCATTTACATAGACAATGATTATGGAAAAGGAATCATACCCTTTCTCACCACTTCTTTACAACAAGTCTATATCCGCATTCCATATCTTAGTGCCATTTCATCTTCAGCCACAGATGATGACATTAGAGAAGAACTTTACATGTTGATGACTATGCAAACTCGAGTGTTTATTGTTCATATGTCTCCCAATCTTGCCTCTAGGCTCTTAACTATAGCAAAAGAGATTGGAATGATGAATGAAGGTTATGTTTGGATTGTAACTGATAGCATGGCTAATGTATTATCATCCTCTTTGGATTCCCAACTCATCAAAGAATCAATGCAGGGAGTACTTGGTGTTAAGACTTATATTCCAAGAACAGAGGAGTTTGATGATTTTAAGGCTAGATGGAGAAGAAAATTCCTTCAAGAATATCCAACCCTTGTTGATATAAAGTTGGATGCTTTTGGAGTGTGGGCCTATGATGCCACCATTGCATTAGCAATGGCTGTGGAGAAAGTTGGAAGAACCAACTTCATGGGTTCAAGAAACATGAGTGGTCTTGAAAGTCTTGGAGTTTCTCAAAGTGGTGAAAAGTTAAGTGAGATTTTGTCAAGTACTAGATTCATTGGCCTCAGTGGAGAGATCAATTTGATTGATGGGCAATTGCAAGCTTCCACCTTTGAGATAATCAATGTGAATGGCAATGGGGAAAGGAGGGTAGGCTTTTGGACATCAAAGAATGGGTTAGTAAGGGATTTGAAATTAACAAATACAAACACTACATATCCTGTTTCAAAGAACAATTTAGGACCCATTATATGGCCAGGGGATACTTATTCTATTCCAAAAGGTTGGGAAGATCCAACAAATGCAAAGAAGTTAAAGATAGGAGTCCCAGTTAGAAAAGGTTTCACTGAATTTGTGAAGGTTACTTGGAATCCCAATACTAATACATCAGAGGTAACTGGTTTCAGCATTGATGTTTTCAAGGCTGCATTGGAATTGTTGCCTTATGCCCTTCCATATGAATTCATCCCATTTGCAAAGGCTAATGGGGAGAGTGCAGGATCATACAATGAGTTGGTCAGCCAAGTCTATTTTGGGAACTTTGATGCTGTAGTGGGAGATCCCACTATTACTGCAAACAGATCCAAGTATGTGGACTTTACTATGCCATACACTGAATCAGGTGTAACTATGATTGTTCTATTGAAAGCAAACAAGCCAGGGAATGCATGGGCTTTCCTGAAACCATTGACATGGAATCTTTGGGCAGCTACTGCTTTTTCCTTTATATTTGTTAGTTTTGTGGTTTGGGTCCTTGAGCACCGTATAAATGAAGATTTTCGAGGGCCTCCTTTGCATCAGATTGGTACCAGCCTATGGTTTTCTTTCTCAGTGGTTGTCTTTGCCCATAGGGAGAAGGTAGTGAGCAACTTGGCTAGATTTGTTGTGATTGTATGGGTTTTTGTGGTACTGATATTGGTTCAAAGCTACACAGCAAGTTTGACTTCATTCTTAACAGTTCAGAAGCTTAGTCCAACTCTCACAAATGTGAATCAGCTTATGAAGAATGGGCTTAATGTTGGATACCCTGAAGGTTCTTTTGTGTATGGGATGTTAAAGAACATGGGATTCCAAGATTTCCAGCTTAAACCTTATATTTCTACAGAAGAATGTGATGACCTCTTCACAAAAGGAAGTGGAAATGGTGGCATTGCTGCTGCTTTTGATGAAACCCCATATTTGAAGTTGATTCTTGAAACTTATTGCTCCAAGTATATCATGGTTGGTCCCACATTTAAAACCGATGGCTTTGGTTATGTTTTTCCTAGAGGTTCACCTTTAGTAGCTGACATTTCAAGGGCAATTTTGAATGTGACACAAGGAGATAGAATGAAAACAATTGAGAATGCATGGTTCAGGAAAAGCAATTGTCCAGATACTAATTCCTCAAATTCTGCAGACAATCTTGGCCTTAATAGCTTCTGGGGACTTTTCCTTATAGCAGGGGTTGCTTCAATTTCATCTCTCTTGATATTTGTAGTTAATTTCTTACATCAGCATAGATATATATGGTTTCAGTCTAATTCCAACACTTCAATGAGTAAACGAATTGGTTCCATGCTTAGCATCTTTGACCAAAAAGATCCGAGTTCCCATGCTTTCAGAAAGAAAAAGATGCAAGGTGAAAGTAAAAATAGCAGCACACATCATCATGGATTAGGAGGACAAGTTGTTGAGTCCTCTACAAGTACTCATTGCCCACCAAGTCCTTCTCCCTCAGGTCAAAGTCAAACGGAATCAAACTTCTCCTTTTTTGGAGATCATGGAATGTTTTCTGCAGAGTACCATGGTGATGTTATTAATCCATATGGTCATGAACCTCATGACATGGAGATAACTATTGTGCAAAATGTTCCATCTACGACTATGGAATTGAATGTAGCCCCTGCACAAAATTGA 2949 0.3917 MEKQRPKLIHALILYWSLYSYVSMAQTVPVKVGIVVDVGGIYGKMGLSCINMAISDFYQKHSHYHTRLLFNVRDSQGDVVTAAAQALDLIKNEEVEAIIGPITSMEANFVIKLGEKTHVPIITFSATSPSLTSLRSQYSFRISQNDSSQVNAITSIVQAFGWKAIVPIYIDNDYGKGIIPFLTTSLQQVYIRIPYLSAISSSATDDDIREELYMLMTMQTRVFIVHMSPNLASRLLTIAKEIGMMNEGYVWIVTDSMANVLSSSLDSQLIKESMQGVLGVKTYIPRTEEFDDFKARWRRKFLQEYPTLVDIKLDAFGVWAYDATIALAMAVEKVGRTNFMGSRNMSGLESLGVSQSGEKLSEILSSTRFIGLSGEINLIDGQLQASTFEIINVNGNGERRVGFWTSKNGLVRDLKLTNTNTTYPVSKNNLGPIIWPGDTYSIPKGWEDPTNAKKLKIGVPVRKGFTEFVKVTWNPNTNTSEVTGFSIDVFKAALELLPYALPYEFIPFAKANGESAGSYNELVSQVYFGNFDAVVGDPTITANRSKYVDFTMPYTESGVTMIVLLKANKPGNAWAFLKPLTWNLWAATAFSFIFVSFVVWVLEHRINEDFRGPPLHQIGTSLWFSFSVVVFAHREKVVSNLARFVVIVWVFVVLILVQSYTASLTSFLTVQKLSPTLTNVNQLMKNGLNVGYPEGSFVYGMLKNMGFQDFQLKPYISTEECDDLFTKGSGNGGIAAAFDETPYLKLILETYCSKYIMVGPTFKTDGFGYVFPRGSPLVADISRAILNVTQGDRMKTIENAWFRKSNCPDTNSSNSADNLGLNSFWGLFLIAGVASISSLLIFVVNFLHQHRYIWFQSNSNTSMSKRIGSMLSIFDQKDPSSHAFRKKKMQGESKNSSTHHHGLGGQVVESSTSTHCPPSPSPSGQSQTESNFSFFGDHGMFSAEYHGDVINPYGHEPHDMEITIVQNVPSTTMELNVAPAQN. 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01127 982 FunFam Glutamate receptor 573 703 - -
Seca4g01127 982 Gene3D - 147 313 - -
Seca4g01127 982 SUPERFAMILY Periplasmic binding protein-like II 433 804 - -
Seca4g01127 982 MobiDBLite consensus disorder prediction 882 930 - -
Seca4g01127 982 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 867 IPR015683 -
Seca4g01127 982 FunFam Glutamate receptor 149 310 - -
Seca4g01127 982 Gene3D - 342 453 - -
Seca4g01127 982 Gene3D - 749 809 - -
Seca4g01127 982 FunFam Glutamate receptor 450 572 - -
Seca4g01127 982 CDD PBP1_GABAb_receptor_plant 31 414 IPR044440 -
Seca4g01127 982 Pfam Receptor family ligand binding region 49 396 IPR001828 -
Seca4g01127 982 Pfam Bacterial extracellular solute-binding proteins, family 3 478 803 IPR001638 -
Seca4g01127 982 SUPERFAMILY Periplasmic binding protein-like I 25 437 IPR028082 -
Seca4g01127 982 Pfam Ligand-gated ion channel 804 834 IPR001320 GO:0015276|GO:0016020
Seca4g01127 982 FunFam Glutamate receptor 2.7 710 809 - -
Seca4g01127 982 Gene3D - 574 697 - -
Seca4g01127 982 SMART GluR_14 454 804 IPR001320 GO:0015276|GO:0016020
Seca4g01127 982 PIRSF IGluLR_plant 3 933 IPR017103 -
Seca4g01127 982 CDD GluR_Plant 453 802 - -
Seca4g01127 982 FunFam Glutamate receptor 353 453 - -
Seca4g01127 982 Gene3D - 454 573 - -
Seca4g01127 982 MobiDBLite consensus disorder prediction 896 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01127 Seca-Chr4 18139140 18144631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01127 26 893 Ion Channels AT2G29120 51.708 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01127 K05387 - tcc:18507124 1091.64