Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01126 ATGGCACAAAGAAACGAGACAGTAGTAGTGAAAGTGGGAGTTGTGCTTGATCTTACTAACGAAACGGTAGGGAAGATGGGGTTAAGTTGCATCAACATCTCCCTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGCCTCCAACTCATCGTTAGGGACTCCCACAGGGACGTCGTTACCGCCGCTGCTCAAGGTATGGCACAAAGAAACGAGACAGTAGTAGTGAAAGTGGGAGTTGTGCTTGATCTTACTAACGAAACGGTAGGGAAGATGGGGTTAAGTTGCATCAACATCTCCCTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGCCTCCAACTCATCGTCAGGGACTCCCACAGGGACGTCGTTACCGCCGCTGCTCAAGCTCTGGATCTTATAAAAAATGAAGAAGTGCAAGCTATCATAGGGCCAGTAACAACAACGGAGGCAGACTTTGTGATCAGGCTTGGAGACAGAGCACATGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTTCTCTTACTTCACTTCAGAGTCCATATTTTTTTCAAATTGCACAAAATGATTTAGCTCAAGTTAAAGTCATAACCACTTTTGTCCAAGCTTTTGGGTGGAAAGAAGTGGTTCTCATTCATGTAGACAATAGTTTTGGGGAAGGAGTCATTCCTAGCTTAACTAATGCTCTACAACAAGCCTATGTTCGAGTTCCCTATCTTAGTGCCATTTCTCTTTCAGCCACAGATGAATCCATCACAGAAGAGCTCTATAAGTTGATGAATATGCCAACCAGAGTCTTTATTGTGCATATGTCACCAAGTCTTGGCTCTCGCCTCTTCACCATAGCAAGGCAAATTGGAATGATGGGCCAAGGCTATGTTTGGATCGTAACTGATGGAATGGCTAATTTCTTCAACTCTTTAAACTCCTCGGTCATGGAAGCAATGGAAGGAGTATTGGGTGCTAGGCCTTATGTTCCAAGAACAAAAGAGCTTGGTGATTTTAAAGCTCGATGGAAAAGAAAATTCCTACTAGACAATCCAACACTTGTTGATGTAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACCACATCATTAGCAATGGCTGTTGAGAAGGTTGCAATTACCAGCAACTTTGGCATTCAAGTGAGAAACACTTCAAGCAACCTGCTTGATCTTGAAAATTTTGGCATTGCACAAAATGGCGAAAAGTTGCGTGAAGCCCTGTCTAACACTAGATTCAGAGGGCTTAGTGGTGATTTTAATATTCTTGGTGGGCAATTACAAGCATCAACTTTTGAGATAATCCAAGTAAATGGTGGTGGGGAAAGAAAGGTAGGATTTTGGACACCCCAAAAGGGGCTATCTAGAAATCTTGACACAAGAGGCCCAAGTATATATTCTACTTCTAAGAACAATCTTAGTCCCATTATATGGCCAGGGGATACATACTCCACTCCAAAGGGATGGGAAATTCCCACAAAAGGAAGGAAATTGAGGATAGGAGTTCCAGTGAAAGATAAAAATAGTTATACTGAATTTGTGAAAATAACACCTGACCCTGTTACCAATTCAATAGTGGTTACTGGCTTTTGCATTGATGTCTTCAAAGCTTTGCTAGAAGTGTTGCCTTATGCCTTACCATATGAATTTATTCCATTTGCAAAGCCCAATGGTGAGATGGCAGGAAATTATAATGAGTTGGTCAGCCAAGTTTATTATGGGGTGTTTGATGCTGTCGTGGGGGATACAACGATTATTGCAAATAGGTCTAACTATGTTGATTTCACAATGCCGTACACAGAATCTGGTGTGACAATGGTTGTTCTAGTAAAAGACAATCGGAAGAAGAATGCGTGGGCCTTTTTGAAACCTCTTACATGGGATCTTTGGGTAACAACAGCTTGTTCATTTGTGTTCATTGGATTTGTTGTTTGGGTCCTTGAACATCGAGTAAATAATAGTTTTAGGGGACCTCCCTCGCATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAATCATGGTGTTTGCCCATCGGGAGAAAGTGATGAGCAACTTAGGTAGATTTGTGGTAATTGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAGAGTTATACCGCGAGTCTCACTTCCCTCTTAACAGTTGAACAACTACGTCCAACTATTACAGATGTCAATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATATTGAAGGACTTAGGTTTCCAAGATTACCAACTCAAAACTTATGAATCCCCAGAACAATGCAATGAGCTTTTCAGAAAAGGAACTACAAATGGTGGCATCGATGCTGCGTTTGATGAAATTCCTTACGTCAAGCACTTTCTTGGAATATATTGTTCCAAGTATGCCATGGTTGAACCCAGATTTAAAACTGGTGGATTTGGTTATGTGTTTCCAAAAGGTTCCCCTATGGTAGCTGACATTTCAAGGGCGATCCTTAATGTGACTCAAGGAGACAAAATGAGAGCAATTGAGAATGCATGGTTCAAGGAAAGCAGTTGTGTGGAGTCTAATACAGAAATTTCCTCTAATAGTCTTGGCCTAGAAAGCTTTTGGGGTTTGTTTCTCGTTGCAGGAATTGCTTCCCTATTAGCACTCCTAATCTTTGCATTGACATTCTTATATCAACATAGGGATATTTGGTTACACAATAATCTTGATACTTCAATATGGAGACGTATTGGAATCTTGGTAAAGATATTCGATGAAAGAGACTCGAGTTGTCACACATTCAAGAAAAGTGAAATGCAAAATAGAAGTGAAACCACTAGTCCTCATCATAACTTAGGTGTAGTTGAGGCCTCCCCAAGTTCACATTTCCCACCTAGTCCATCTAGTCAAACTGAATCAAACTTTTCCTTTTATGAAGACTTTAGTCCAGACTATGGTGATGTTAAACCATAA 2982 0.4051 MAQRNETVVVKVGVVLDLTNETVGKMGLSCINISLSDFYLSHSHYKTSLQLIVRDSHRDVVTAAAQGMAQRNETVVVKVGVVLDLTNETVGKMGLSCINISLSDFYLSHSHYKTSLQLIVRDSHRDVVTAAAQALDLIKNEEVQAIIGPVTTTEADFVIRLGDRAHVPIVTFSATSPSLTSLQSPYFFQIAQNDLAQVKVITTFVQAFGWKEVVLIHVDNSFGEGVIPSLTNALQQAYVRVPYLSAISLSATDESITEELYKLMNMPTRVFIVHMSPSLGSRLFTIARQIGMMGQGYVWIVTDGMANFFNSLNSSVMEAMEGVLGARPYVPRTKELGDFKARWKRKFLLDNPTLVDVNLNIFGIWAYDATTSLAMAVEKVAITSNFGIQVRNTSSNLLDLENFGIAQNGEKLREALSNTRFRGLSGDFNILGGQLQASTFEIIQVNGGGERKVGFWTPQKGLSRNLDTRGPSIYSTSKNNLSPIIWPGDTYSTPKGWEIPTKGRKLRIGVPVKDKNSYTEFVKITPDPVTNSIVVTGFCIDVFKALLEVLPYALPYEFIPFAKPNGEMAGNYNELVSQVYYGVFDAVVGDTTIIANRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWVLEHRVNNSFRGPPSHQIGTSLWFSFSIMVFAHREKVMSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPTITDVNQLIKNRMNVGYLKGSFVYGILKDLGFQDYQLKTYESPEQCNELFRKGTTNGGIDAAFDEIPYVKHFLGIYCSKYAMVEPRFKTGGFGYVFPKGSPMVADISRAILNVTQGDKMRAIENAWFKESSCVESNTEISSNSLGLESFWGLFLVAGIASLLALLIFALTFLYQHRDIWLHNNLDTSIWRRIGILVKIFDERDSSCHTFKKSEMQNRSETTSPHHNLGVVEASPSSHFPPSPSSQTESNFSFYEDFSPDYGDVKP. 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01126 993 Pfam Receptor family ligand binding region 99 447 IPR001828 -
Seca4g01126 993 FunFam Glutamate receptor 193 348 - -
Seca4g01126 993 FunFam Glutamate receptor 626 756 - -
Seca4g01126 993 FunFam Glutamate receptor 2.7 763 862 - -
Seca4g01126 993 Pfam Bacterial extracellular solute-binding proteins, family 3 535 856 IPR001638 -
Seca4g01126 993 Gene3D - 512 625 - -
Seca4g01126 993 Gene3D - 626 757 - -
Seca4g01126 993 FunFam Glutamate receptor 405 504 - -
Seca4g01126 993 PIRSF IGluLR_plant 65 979 IPR017103 -
Seca4g01126 993 PIRSF IGluLR_plant 1 77 IPR017103 -
Seca4g01126 993 Pfam Ligand-gated ion channel 857 887 IPR001320 GO:0015276|GO:0016020
Seca4g01126 993 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 77 938 IPR015683 -
Seca4g01126 993 SMART GluR_14 507 857 IPR001320 GO:0015276|GO:0016020
Seca4g01126 993 SUPERFAMILY Periplasmic binding protein-like I 76 488 IPR028082 -
Seca4g01126 993 CDD PBP1_GABAb_receptor_plant 83 466 IPR044440 -
Seca4g01126 993 Gene3D - 410 509 - -
Seca4g01126 993 Gene3D - 196 356 - -
Seca4g01126 993 Gene3D - 767 862 - -
Seca4g01126 993 FunFam Glutamate receptor 505 626 - -
Seca4g01126 993 SUPERFAMILY Periplasmic binding protein-like II 484 858 - -
Seca4g01126 993 CDD GluR_Plant 504 855 - -
Seca4g01126 993 MobiDBLite consensus disorder prediction 964 981 - -
Seca4g01126 993 MobiDBLite consensus disorder prediction 938 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01126 Seca-Chr4 18113165 18120698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01126 66 975 Ion Channels AT2G29120 51.096 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01126 K05387 - pvy:116139285 1152.12