Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01125 ATGGTGAAGAATCATCTTGTCTACTCTCCAATCATCATAATAATTATTTGGTCTCTAAGTTTCTTCTTGATAGGTATGGCACAAAGAAACGAGACAGTAGTAGTGAAAGTGGGAGTTGTGCTTGATCTTACTAACGAAACGGTAGGGAAGATGGGGTTAAGTTGCATCAACATCTCCCTCTCAGATTTCTATCTCTCTCATTCTCATTACAAAACCAGCCTCCAACTCATCGTTAGGGACTCCCACAGGGACGTCGTTACCGCCGCTGCTCAAGCTCTGGATCTCATAAAAAATGAAGAAGTGCAAGCTATCATAGGACCGATAACAACTATGGAGGCAGACTTTATGATCCGGCTTGGAGACAAAACACATGTTCCAATTGTAACCTTTTCAGCAACAAGCCCTGCTCTTGCTTCGCTTCAAAGTCCATATTTTTTCCAAATCGCACAAGATGATTCAGCTCAAGTGAAAGCTATAACAACAATTATCCAAGCTTTTGGGTGGAAAGAAGTGGTGCTCATTTACATAGACGATAGTTTTGGGGAAGGAGTCATTCCTTTCTTAACCAATGCTCTCCAACAAGCCTATGTTCGAGTTCCCTATCTCAGTGTCATTTCTCTTTCAGCCACCAATGAAGCTATCACTGAAGAGCTCTATAAGTTAATGACTATGCCAACTAGAGTCTTTATAGTGCACATGGTGCCACGCCTTGGCTCTCGCCTCTTCACCCTAGCAAAGCAAATTGGAATGATGGACCAAGGCTATGTTTGGATTGTAACTGATGGCATGACTAGTTTGTTCAGCTCCTTAAACACTTCAGTCATGGAATCAATGGAAGGAGTATTGGGTGTGAGGCCTTATGTTCCAAGAACGAAAGAGCTTGATTATTTCAAAGCTCGATGGAAAAGAAAATTCTTACGAGATAATCCAACACACTTTGACACAAATTTGAATGTTTTTGGAATATGGGCTTATGATACTACTACAGCATTAGCAATGGCGGTTGAGAAAGTTGGAACCACCAACTTTGGCTTCCACGTAAGCAATTCTTCAAGCAACATTCTTGATTTTGAAAAGTTTGGCATTGCACAAAATGGTGAGAAGTTGCGTGAAGCCCTGTCGAACACTAGATTTAGAGGCCTTGGTGGTGATTTCAATATTCTTGGTGGGAAGTTACAAGCATCAACTTATGAGATAATTAATATGGTTGGTAATGGTGAAAAAAGGGTAGGATTTTGGACGCCTAAAAAGGGACTATCTAGAAATCTTAACGCAAAAGAACCCAAAATATATTCTTCTTCAAAAAACAATCTTGGTCCCATTATATGGCCAGGGGATACATACTCTATTCCAAAGGGATGGGAAATTCCCATAAAAGGCAAGAAGTTGAGGATAGGAGTTCCGATAAAAGAAAAAGATAGTTATACTCAGTTTGTGAAAATAACACCCGACCCTATTACCAATTCAACAGTGGTCACTGGATTTTGCATTGATGTCTTCAAAGCTGTGCTAGATGTGTTGCCATATGCCTTACCATATGAGTTCATTCCATTTGCAAAGCCCGATGGTGAGATGGCGGGAGATTATAATGAGTTAGTCAGCCAAGTTTATTATGGGGTATTTGACGCTGTGGTGGGGGATACAACAATTATCGGAAATAGGTCAAACTACGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTTAGTAAAAGATAATAGGAAGAAAAACGCGTGGGCTTTTTTGAAACCACTAACATGGGATCTTTGGGTAACAACTACTTGTTCATTCATATTCATTGGATTTGTTGTTTGGGTCCTTGAACATCGGGTAAACAACAGCTTTAGGGGGCCTCCCTCACATCAAATTGGCACGAGCTTATGGTTTTCCTTCTCAATCATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTTATTGTATGGGTGTTTGTGGTTTTAATTCTGGTTCAAAGTTACACTGCAAGCCTCACTTCCCTCTTAACAGTTGAACAACTACGCCCAACTGTTACAGATGTCCATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATTTTGAAAGACTTAGGTTTCCAAGATTTCCAACTCAAAATTTATGAATCTCCAGAGGAATGTAATGAGCTTTTCAGAAAAGGTAGTACAAATGGTGGCATTGATGCTGCGTTTGATGAAGTTCCTTATGTGAAGCACTTTCTTGGAACTTATTGTTCTAAATATGTCATGGTTGAACCCAGGTTTAAAACTGGCGGCTTTGGTTATGTGTTCCCAAAAGGTTCCCCTCTTGTAGCTGACATTTCAAGGGCAATCCTCAATGTGACTCAAGGAGACAAAATGAGAGCAATTGAGAATGCATGGTTTAAGGAAAGCAATTGTGTGGAGTCTAATTCAGAAATTTCTTCTAAAAGTCTTGGCCTTGAAAGTTTTTGGGGTTTGTTTCTCGTTGCAGGGATTGCTTCCTTATTAGCACTCCTAATATTTGCATTAACATTCTTATATCAACATAGGCATATTTGGTTACACAATAATCCTAATACTTCAATATGGAGACGTATTGGAATCTTGATAAGGATATTTGACCAAAGAGACTTGGACTGTCACACATTCAAGAAAAGTGAAACTTGTAGTCCTCATCATGTATTAGGTGTAGTTGAGGCCTCGCCAAGTACACATTGCCCACAAAGTCCATCTAGTCAAACCGAGTCAAACATTTCCTTTTATGGAGACTTTAGTTCAGACCAGGGTGATGCTAAACCATAA 2835 0.3979 MVKNHLVYSPIIIIIIWSLSFFLIGMAQRNETVVVKVGVVLDLTNETVGKMGLSCINISLSDFYLSHSHYKTSLQLIVRDSHRDVVTAAAQALDLIKNEEVQAIIGPITTMEADFMIRLGDKTHVPIVTFSATSPALASLQSPYFFQIAQDDSAQVKAITTIIQAFGWKEVVLIYIDDSFGEGVIPFLTNALQQAYVRVPYLSVISLSATNEAITEELYKLMTMPTRVFIVHMVPRLGSRLFTLAKQIGMMDQGYVWIVTDGMTSLFSSLNTSVMESMEGVLGVRPYVPRTKELDYFKARWKRKFLRDNPTHFDTNLNVFGIWAYDTTTALAMAVEKVGTTNFGFHVSNSSSNILDFEKFGIAQNGEKLREALSNTRFRGLGGDFNILGGKLQASTYEIINMVGNGEKRVGFWTPKKGLSRNLNAKEPKIYSSSKNNLGPIIWPGDTYSIPKGWEIPIKGKKLRIGVPIKEKDSYTQFVKITPDPITNSTVVTGFCIDVFKAVLDVLPYALPYEFIPFAKPDGEMAGDYNELVSQVYYGVFDAVVGDTTIIGNRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWVTTTCSFIFIGFVVWVLEHRVNNSFRGPPSHQIGTSLWFSFSIMVFSHREKVVSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPTVTDVHQLIKNRMNVGYLKGSFVYGILKDLGFQDFQLKIYESPEECNELFRKGSTNGGIDAAFDEVPYVKHFLGTYCSKYVMVEPRFKTGGFGYVFPKGSPLVADISRAILNVTQGDKMRAIENAWFKESNCVESNSEISSKSLGLESFWGLFLVAGIASLLALLIFALTFLYQHRHIWLHNNPNTSIWRRIGILIRIFDQRDLDCHTFKKSETCSPHHVLGVVEASPSTHCPQSPSSQTESNISFYGDFSSDQGDAKP. 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01125 944 Gene3D - 712 819 - -
Seca4g01125 944 FunFam Glutamate receptor 326 461 - -
Seca4g01125 944 SUPERFAMILY Periplasmic binding protein-like II 441 815 - -
Seca4g01125 944 PIRSF IGluLR_plant 6 940 IPR017103 -
Seca4g01125 944 Gene3D - 467 582 - -
Seca4g01125 944 MobiDBLite consensus disorder prediction 912 944 - -
Seca4g01125 944 FunFam Glutamate receptor 583 713 - -
Seca4g01125 944 CDD GluR_Plant 461 812 - -
Seca4g01125 944 SMART GluR_14 462 814 IPR001320 GO:0015276|GO:0016020
Seca4g01125 944 Gene3D - 153 317 - -
Seca4g01125 944 FunFam Glutamate receptor 462 583 - -
Seca4g01125 944 MobiDBLite consensus disorder prediction 913 935 - -
Seca4g01125 944 Gene3D - 583 711 - -
Seca4g01125 944 Pfam Ligand-gated ion channel 814 844 IPR001320 GO:0015276|GO:0016020
Seca4g01125 944 CDD PBP1_GABAb_receptor_plant 41 423 IPR044440 -
Seca4g01125 944 Gene3D - 372 466 - -
Seca4g01125 944 FunFam Glutamate receptor 157 315 - -
Seca4g01125 944 SUPERFAMILY Periplasmic binding protein-like I 34 445 IPR028082 -
Seca4g01125 944 Pfam Receptor family ligand binding region 57 405 IPR001828 -
Seca4g01125 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 876 IPR015683 -
Seca4g01125 944 Pfam Bacterial extracellular solute-binding proteins, family 3 489 813 IPR001638 -
Seca4g01125 944 FunFam Glutamate receptor 2.7 720 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01125 Seca-Chr4 18085151 18091225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01125 15 939 Ion Channels AT2G29120 51.018 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01125 K05387 - tcc:18507124 1137.48