Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01116 ATGGCCTCTAAGCTCTACGATTACTGCAAGTCCGCCACAGCCACGCTCTACTGCCGCCCTGACTCCGCCTTTCTCTGCGGCGCCTGTGACTCCAAGGTCCACGCCGCCAACAAACTCGCCTCCCGTCATCCACGTGTCTCTCTCTGTGAAGTCTGTGAACAAGCCCCTGCTCACGTCACCTGTAAGGCTGACGCCGCTTCCCTCTGCCTCGCCTGTGACCAAGACATCCACTCTGCTAACCCTCTCGCTAGCCGCCACGAGCGTTTCCCTGTCACTCCAATCTTCGAATCCGTCCACTCCGTCAAGTCATCCTCCACCGCTAACTTCCTCGATCACCACCACTTCTTCTCCGATGATGCAGATGCAGATGCAGAAGAAGCCGAGGCTGCTTCCTGGTTGCTTCCAGCACCTAAGACAGATCTGTTCTCCGAAAACGAACCTCTTACCTTCATAGATCTGGATTACGGTCTTGATCCCAAAGCTGAACAGAAAAGCGACGGAGTGGTTCCTGTACAGAGCAACTTCGCTTATGGCTACAATCACAATTTCCAGTCACATTCACAGTCACAATCTCAGTCTCAGATGAGCCATAGTAATGTTCAGGTATCATCTTCGTCGATGGAGGTTGGGGTTGTGCCGGATGGGAGCACCGCATCGGAGATATCGAACTGCAGCTATGGCAAGGCGGCGGATAGGGAAGCGAGGGTGTTGAGGTACAGGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACTATTCGTTACGCTTCACGGAAAGCCTATGCGGAAACCAGACCTAGAATCAAAGGCAGGTTCGCCAAACGCTCTGATGCCGTCGTCGACCATCTTGGTGGATACGGCGTCGTTCCAACCTGTTGA 876 0.5377 MASKLYDYCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAASLCLACDQDIHSANPLASRHERFPVTPIFESVHSVKSSSTANFLDHHHFFSDDADADAEEAEAASWLLPAPKTDLFSENEPLTFIDLDYGLDPKAEQKSDGVVPVQSNFAYGYNHNFQSHSQSQSQSQMSHSNVQVSSSSMEVGVVPDGSTASEISNCSYGKAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDAVVDHLGGYGVVPTC. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01116 291 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 7 277 IPR045281 GO:0009909
Seca4g01116 291 SMART bboxneu5 49 91 IPR000315 GO:0008270
Seca4g01116 291 SMART bboxneu5 1 48 IPR000315 GO:0008270
Seca4g01116 291 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Seca4g01116 291 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Seca4g01116 291 Pfam CCT motif 232 274 IPR010402 GO:0005515
Seca4g01116 291 Pfam B-box zinc finger 8 47 IPR000315 GO:0008270
Seca4g01116 291 Pfam B-box zinc finger 47 90 IPR000315 GO:0008270
Seca4g01116 291 CDD Bbox1_BBX-like 48 91 - -
Seca4g01116 291 CDD Bbox1_BBX-like 7 48 - -
Seca4g01116 291 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01116 Seca-Chr4 17832896 17834200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01116 1 290 C2C2-CO-like Transcription Factor Family AT5G24930 52.342 5.45e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca4g01116 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01116 - - gmx:100804201 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01116 4 17832896 17834200 Seca4g01116 4 17832896 17834200 ECH