Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01114 ATGGGTTATCTCAATTCAGTTTTGTCCTCTTCAAGCCAGATTCATGCTACCAATGACTCACCTCCTGTGAGTGGTGGCGGTCTCAGTCACAATGGCAAATTCAGCTATGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCCATGGAAGATTTTTATGAGACGAGAATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTAATCAATCATCCAAAATTCATTTCTGATACCAAATCAGCAATAGCTGATGCATATAACCATACCGATTCTGAATTTCTGAAATCAGAAAATAGTCATAACAGAGATGCTGGCTCTACTGCTTCCACTGCCATTCTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGACTCCAGGGCTGTCATATGCAGGGGTGGTAATGCAATTGCTGTTTCTAGAGATCACAAACCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGACCCAGAAATCCAGGAAGAGAAAGTTGACAGTTCTCTTGAGTTTCTTATTTTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCAGAGGAAGCAGCAAAGAGACTGATGCAAGAAGCCTCTCAGAGAGGTAGTGCTGACAACATCACTTGTGTTGTTGTTCGTTTTGTCATGAACCAAGGCACCTCTTCCCATAGCCACAGCAACACCTCTTCTCATGGCCATAGCAACACCTCTTCTATTGGCCACAACAACACCTCTTCTCATGGCCATAGCAACACCTCTTCTCAAGGCCACAGCAACACCTCTTCTATTGGCCACAACAACACCTCTTCTCATGGCCATAGCAACACCTCTTCTCAAGGCCACAGCAACACCTCTTCTATTGGCCACCGCAACACCTCTTCTCATGGCCACAACAACACCTCTTCTGATGGCCACAGTAACACCTCTTCTATTGGCCACAGCAACACCTCTTCTCATGGCCACAGCAACACCTTGTAA 1179 0.4538 MGYLNSVLSSSSQIHATNDSPPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKKNLFSNLINHPKFISDTKSAIADAYNHTDSEFLKSENSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMQEASQRGSADNITCVVVRFVMNQGTSSHSHSNTSSHGHSNTSSIGHNNTSSHGHSNTSSQGHSNTSSIGHNNTSSHGHSNTSSQGHSNTSSIGHRNTSSHGHNNTSSDGHSNTSSIGHSNTSSHGHSNTL. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01114 392 Gene3D - 27 287 IPR036457 -
Seca4g01114 392 SUPERFAMILY PP2C-like 29 281 IPR036457 -
Seca4g01114 392 FunFam probable protein phosphatase 2C 59 27 285 - -
Seca4g01114 392 SMART PP2C_4 25 279 IPR001932 -
Seca4g01114 392 Pfam Protein phosphatase 2C 64 274 IPR001932 -
Seca4g01114 392 ProSiteProfiles PPM-type phosphatase domain profile. 35 281 IPR001932 -
Seca4g01114 392 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
Seca4g01114 392 CDD PP2Cc 34 281 IPR001932 -
Seca4g01114 392 MobiDBLite consensus disorder prediction 287 392 - -
Seca4g01114 392 SMART PP2C_SIG_2 30 281 IPR001932 -
Seca4g01114 392 PANTHER PROTEIN PHOSPHATASE 27 280 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01114 Seca-Chr4 17770480 17775220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01114 1 299 PP2C-type Phosphatase Gene Family AT4G31750 88.372 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01114 K17506 - gmx:100797070 534.643