Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01095 ATGGGAATATATCTCAGTACTCCTAAAACAGAAAAGTTTTCTGAAGATGGTGAAAACGACCGTCTTAGATATGGTTTATCATCCATGCAAGGATGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGACGAGTCCACTTCGTTTTTCGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCTAAGTTCTGTGCTAAGTTTCTTCACCAACAGGTGCTCAAAAGTGAAGCATACTTAGTTGGAGATATAGGAACCGCTCTTCAGAAAGCTTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAAGGGATGGAGGGAATTATCAATCTTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAGGCAGTGATGGTAATAACCAAGTTGATGATTGGGCTTCTGAGGAGGGGCCTCACTCAGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAATGGCCAACTTGTCGTTGCAAATGCTGGTGATTCACGTTGTGTACTATCTAGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAAATTGAGAGCCAAAGAATCTTAAGAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGCAGTTTAAATCTTGCAAGAGCTATCGGTGACATGGAATTTAAACAGAATAAATTTCTCCCGCCTGAGAAACAAATTGTAACTGCCAATCCAGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAATTGGTAGATTTTGTTCATGAACAATTGCGCTCGGAAACAAAACTTTCTGCAGTGTGTGAAAGAGTACTTGACCGGTGTTTGGCACCATCAACAGCTAATGGCGATGGATGTGATAACATGACTATGATCTTGGTGCAGTTCAAAAAACCTGCTCAGTCTAGTGCACCAGCAGAAGAGCAATCCTCATCAAATGGACAAGCTGAAACAGAACCAAAACTGGAAAGAAGTGAAATTTAA 1083 0.4155 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKSEAYLVGDIGTALQKAFLRMDEMMRGQKGWRELSILGDKINKFTGMIEGLIWSPRGSDGNNQVDDWASEEGPHSDFAGPTSGSTACVAVIRNGQLVVANAGDSRCVLSRKGQAYNLSRDHKPDLEIESQRILRAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPPEKQIVTANPDINTVELCDEDEFMVLACDGIWDCMSSQQLVDFVHEQLRSETKLSAVCERVLDRCLAPSTANGDGCDNMTMILVQFKKPAQSSAPAEEQSSSNGQAETEPKLERSEI. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01095 360 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Seca4g01095 360 SMART PP2C_SIG_2 28 329 IPR001932 -
Seca4g01095 360 SMART PP2C_4 13 327 IPR001932 -
Seca4g01095 360 CDD PP2Cc 23 329 IPR001932 -
Seca4g01095 360 MobiDBLite consensus disorder prediction 335 351 - -
Seca4g01095 360 PANTHER PROTEIN PHOSPHATASE 2C 18 328 IPR015655 GO:0004722|GO:0006470
Seca4g01095 360 MobiDBLite consensus disorder prediction 330 360 - -
Seca4g01095 360 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Seca4g01095 360 Gene3D - 1 330 IPR036457 -
Seca4g01095 360 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Seca4g01095 360 Pfam Protein phosphatase 2C 155 315 IPR001932 -
Seca4g01095 360 Pfam Protein phosphatase 2C 23 104 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01095 Seca-Chr4 17564775 17571963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01095 1 341 PP2C-type Phosphatase Gene Family AT2G25070 76.833 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01095 K17499 - gmx:100787778 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01095 4 17564775 17571963 Seca4g01095 4 17564775 17571963 ECH
Seca8g03243 8 93040624 93051376 Seca4g01095 4 17564775 17571963 PCT