Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01084 ATGGCTGGTTGTTCAAGAACTGCCTCTGCTTCTCTTTTGCTCCTATTCCTTCTCTTTGGCTTCTCTGCAGCTAAGGAACTATTGGTTGGAGGCAAGATAGATGCATGGAAGGTTCCATCCTCTGAAGCAGACTCCCTCAATCAATGGGCTGAAAGGTCTCGTTTCAAAGTTGGGGATTTTCTTGTTTGGAAATATGACGGTGGGAAAGACTCAGTTTTGCAAGTAAACAGGGAAGGTTATGCTAATTGCAACACCTCCAACCCCATTGAAGAGTACAGTGATGGGAACACTAAGGTGAAGCTAGACCGTCCTGGGCCATTCTACTTCATCAGTGGAGCAAAGGGTCACTGTGAGAAGGGACAAAAGGTCATTGTGGTGGTTATGTCTCCAAAGCGCAGCAGATACATGGCAATTTCTCCTGCACCTTCTCCTGCAGAGTTTGAAGAAGGTCCAGCTGTTGCTCCTACTAGCAGTGCCACAGTGTTGCAAGGTGGCCTTGTGACTGCTCTGGCTATGTATGTGGGTTTATTTCTCATGTGA 540 0.4704 MAGCSRTASASLLLLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAERSRFKVGDFLVWKYDGGKDSVLQVNREGYANCNTSNPIEEYSDGNTKVKLDRPGPFYFISGAKGHCEKGQKVIVVVMSPKRSRYMAISPAPSPAEFEEGPAVAPTSSATVLQGGLVTALAMYVGLFLM. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01084 179 FunFam Early nodulin-like protein 1 24 132 - -
Seca4g01084 179 ProSiteProfiles Phytocyanin domain profile. 25 129 IPR003245 GO:0009055
Seca4g01084 179 CDD OsENODL1_like 25 128 IPR041846 -
Seca4g01084 179 Pfam Plastocyanin-like domain 36 121 IPR003245 GO:0009055
Seca4g01084 179 Gene3D - 23 133 IPR008972 -
Seca4g01084 179 PANTHER BLUE COPPER PROTEIN 26 140 IPR039391 GO:0009055
Seca4g01084 179 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01084 Seca-Chr4 17495335 17495959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01084 11 176 Phytocyanin Superfamily AT2G25060 56.287 3.90e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01084 - - tpra:123897354 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01084 4 17495335 17495959 Seca4g01084 4 17495335 17495959 ECH
Seca8g03247 8 93159146 93160123 Seca4g01084 4 17495335 17495959 PCT