Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01073 ATGGAGCCAACGTGCGTAGATACTTCTCTCAACCTCAACAGTATTCCCTCTCTGGAAACGGATGTTACGCAGGCCAAGGTTTTGGTTGAGGAATTGCAGCGTCTGAGTTGTGAGAATAAGAGATTAACGGAGACGCTGAACAACATGTACGAAAATTATCTTGTTTTGCAAAAGCATTTGAGTCAATTCAACCAAATGAGGAACACGGATTTTGAAAAGGAATTAGCGGCGACACCATCGGTAGCGATGAAGAGAAAGGCGGAGAATGAGAATTGTATGAATCTGTTTGGTATTAGTGAGTGCAGCACCACTACTGAGGAAGAGACATTCAAAAGGCCCAAGTATAACACCTCACCAAAGGTTTCCAAAGTTCTTGCACGAACAGAGGCATCTGATACCAGCTTATATGTGAGGGATGGATATCAATGGAGAAAATATGGCCAGAAAGTCACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGCTCCTTTGCTCCTAGCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGCAGAAGACCCTACGGTATTGGTGACAACTTATGAAGGAGAGCACAACCATACGCATCATCACCAAGCGGAAATATCACTTACTTCGAGCCAAAGTGAGAATATCTTCCCTGCCCCGGCAGGTTCACCCTCACCCAAGAATCGGAGCACAGTTGCAGGTCCAACTGTAACACTTGACTTGGTCCAGTCAAAATTGGTTGACAATGCCGAAAAGTCATCTATCCAGCAGTTTTTAGTTCAACAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCACAGCCGCACTTGCTACTGCCATTTCTGGGAGAATTCTAGACCACTCTTCTACGGAAAAACGGTGA 876 0.4475 MEPTCVDTSLNLNSIPSLETDVTQAKVLVEELQRLSCENKRLTETLNNMYENYLVLQKHLSQFNQMRNTDFEKELAATPSVAMKRKAENENCMNLFGISECSTTTEEETFKRPKYNTSPKVSKVLARTEASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPTVLVTTYEGEHNHTHHHQAEISLTSSQSENIFPAPAGSPSPKNRSTVAGPTVTLDLVQSKLVDNAEKSSIQQFLVQQMATSLTRDPNFTAALATAISGRILDHSSTEKR. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01073 291 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g01073 291 Gene3D WRKY domain 121 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g01073 291 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g01073 291 ProSiteProfiles WRKY domain profile. 139 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g01073 291 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g01073 291 Coils Coil 25 52 - -
Seca4g01073 291 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 282 IPR044810 GO:0003700
Seca4g01073 291 FunFam WRKY transcription factor 40 122 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01073 Seca-Chr4 17365628 17367835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01073 6 290 WRKY Transcription Factor Family AT1G80840 45.066 2.43e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g01073 WRKY 4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01073 - - gmx:100127373 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03258 8 93478149 93480163 Seca4g01073 4 17365628 17367835 PCT