Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01065 ATGGCGCAGTGTCACCGGAACAACGCGGGATCAATCGTTATCGACCACCGTCACTCAGCCAAGAATGCAACCGCCGGCGGCCACTTCCGCCTCTGGAATTCTCTCTCTGCCTCCTCGTTCCGCCGCATTATCTTCGACGCCGTCAGCTGTGGCGGCAGCTCTCGTCACCAGCGCCACCAAGATGACGACTACGCCTGTAGCTCCGCCACATCAACGGCGAGCTTAGCCTCCGGGAGCTACAGGGAGAAGCGGCAAGTGGAAGAGGAGAAGTCGGAGAAGCTATTGGATCTTCTGAACATAACGGAATGCGAAACGGACGCGGACGCGAAGAAGAAGGAAGAGGCATTGACGGAGCTGAAGCAAGTGGTGAAGGAGTTGCGTGGAGAAGACTTGACGAAGCGGCAAATAGCGGCGGCGAGAGTGAGGTCACTTGCGAAGGAAGATTCCGAAGCGAGAGGAACACTCGCAATGCTTGGAGCAATTCCTCCACTCGTTGGAATGCTTGATTTGGAAGATTCTCATTCTCAGATCGCTTCGCTCTATGCCTTACTCAATCTCGGGATCGGCAACGATGCAAATAAAGCCGCCATTGTCAAAGTTGGCGCTGTTCACAAGATGCTCAAGCTCATTGAATCGCCGGAAGCTCCAGATTCATCGGTATCTGAAGCAATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCCGGTGCAATACAATTCCTAGTTAGAACTCTTCAAAATTTCGATAATAAAAGTGGCTCACAAGTAGAGCAAGATGCTCTCCGAGCTCTGTACAATCTCTCAATCTTTCAGACCAACATTTTATTCGTGTTGGAAACTGATTTGGTCTCGTTTCTGATAAATGCAATAGGAGACATGGAAGTGAGTGAAAGAGTCCTTTCAATCCTGAGCAATTTGGTGTCAACTCCTGAGGGTAGAAAAGCTGTTAGTGCTGTGAGGGATGCGATTTCAATTCTGGTGGATGTATTGAATTGGACAGATTCGCCACAATGCCAAGAGAAAGCATCATACATTTTGATGATTATGGCACACAAAGCCTATGGTGATAGACAGACCATGATTGAGGCAGGGATTATGTCTTCACTGCTTGAGTTAACACTCCTGGGTACCACATTGGCACAGAAAAGGGCTTCAAGGATATTGGAATGCTTGAGGATAGACAAAGGGAAACAGGTTTCTAGGAGCTTTGGAGGAAACTTAGGTGCTACTGTATCTGCACCTATTTGTGCCTCTTCATCATCTTTTACAAAGCCAGATGGAGGATTGGTGGAGGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAATTGGTCCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTGAAGAGGGCCAACTTGCGTCAGGATTTTGTTCCATCCGAGCATTTCACTTCACTCACTTCAAGTTCGACTTCAAAGAGCCTGCCATTTTGA 1494 0.4766 MAQCHRNNAGSIVIDHRHSAKNATAGGHFRLWNSLSASSFRRIIFDAVSCGGSSRHQRHQDDDYACSSATSTASLASGSYREKRQVEEEKSEKLLDLLNITECETDADAKKKEEALTELKQVVKELRGEDLTKRQIAAARVRSLAKEDSEARGTLAMLGAIPPLVGMLDLEDSHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPEAPDSSVSEAIVANFLGLSALDSNKPIIGSSGAIQFLVRTLQNFDNKSGSQVEQDALRALYNLSIFQTNILFVLETDLVSFLINAIGDMEVSERVLSILSNLVSTPEGRKAVSAVRDAISILVDVLNWTDSPQCQEKASYILMIMAHKAYGDRQTMIEAGIMSSLLELTLLGTTLAQKRASRILECLRIDKGKQVSRSFGGNLGATVSAPICASSSSFTKPDGGLVEEEDMMSEEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSEHFTSLTSSSTSKSLPF. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01065 497 SMART arm_5 148 188 IPR000225 GO:0005515
Seca4g01065 497 SMART arm_5 318 360 IPR000225 GO:0005515
Seca4g01065 497 SMART arm_5 279 317 IPR000225 GO:0005515
Seca4g01065 497 SMART arm_5 190 233 IPR000225 GO:0005515
Seca4g01065 497 SMART arm_5 234 278 IPR000225 GO:0005515
Seca4g01065 497 Coils Coil 109 129 - -
Seca4g01065 497 Gene3D - 115 401 IPR011989 -
Seca4g01065 497 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 497 - -
Seca4g01065 497 SUPERFAMILY ARM repeat 118 403 IPR016024 -
Seca4g01065 497 Coils Coil 438 458 - -
Seca4g01065 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 277 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01065 Seca-Chr4 17157079 17158979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01065 36 398 U-box Gene Family AT3G46510 32.533 1.64e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01065 - - gmx:100818576 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01065 4 17157079 17158979 Seca4g01065 4 17157079 17158979 PCT