Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01056 ATGTATGTTGGATCTTCCCAAGCTCGAAGTGTTATAAGAGAGCATGAATTTTACTTTCCAAAAAAGCAGAAGAAGATCAAGAAAAAGAAATCCGGTCACATAGTTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTGCTTTTGACATCATATGAGATGATCAACTTTGACACATCATCATTAAAACCTATAAGATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTATTTTCTTCATTGAAGCAATACTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTACAGAATAACTTGGATGAACTGTTTATGCTTATGCATTTCCTTGATTCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCACAAAATGTTGGCCCCACATCTTCTGCGAAGAGTGAAAAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATCTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTTTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGACGATCCAAAAGAATCATTTAAACAGCTGCTGGAATCATCAGGGAAGTTGCAATTACTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAAGTACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGAATAAACCTTGCAACTGCTGACACGGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACGAACAAGGTATTGATTTATAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTGAAGACTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGGTACGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAGGCAGGAAAATCCCGCCAAATCCATTATGATGCAGCTGCTATCGATAGATTGCTGGATCGTGACCAAGTTGGAGATGAAGAGGCTACTGTGGATGATGAAGATGAAGATGGATTTTTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGTTGAGGCTGCAGAAGAGGAGGCAGCCCAAAAAAGAGCAATGGAGACTGTGAACAGTTCAGAAAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAACATAAAGTTGAGGAGTTTAATGCGTTGGGAAAAGGGAAACGAAACCGCAAACTGATGGTTTCTGTTGATGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGTGATACAAATCCCGTTGGAATTACTTCTGCTAAAAGGCCTTATAAAAAAAAAGCACGTGCAGCAGATAGCACAGAACCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACATTCTCAGATGGTGTTCCAAAAGAGGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTTTTGCTCCTGATAAGGGACAAAGTGAGGTCTGCATCAGAACATCCTCAAACTCCACTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTAGTTCTTCTGCGTGCTGTGTTAAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTAAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTCATAAATTTACCAGTACCAGGACAAATTGGCTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCGGAAGTACCCAACAATCAATCCAGGGAAAATGGTGGGAGTGACATTGCAGCTGATGGGGCACAAGGTTCAGGTGATGCTAGGAGCCAAGCACAGTTATATCAAGACTCCTCCATATTATATCATTTTAGGGACATGCAAAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGACCCAAAAGCAAGTGAAGAAATTAAAATTGAATCCAAGCCTACAAATTTTCAAAATTATAAATCAGGGGACACTGACACCCAAATGATTGATCAACTGCCACAAGTAGAAACAATAGCTTCAGAAGATATTTCGGTTGCTTGTGATAATGATGCAAATCGATTGGAATTAGTTCGACTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAATCCCATGGATTTAGTTCAAACATCTTTGGCAAGAGAACCAGAAGACGTCAATATGGTGAAGAATTTCCCACCACTAGAAACCATTTGTAAAGATATCAACAGAATTCTAACACCCACACAAGAACAGCCTATTGCAGAAATGCCAAAATTGAATTCAGATAACAAATCAGGGGACGTATCACCCGGTGAAGTTTTGGGGTCCAAATCGTTGCCTATCTCTCAAGATAACTGCAAACCTGATACTTCGGCAGACAATGAGAGACAAGATATGGTAATAGATTCTGAACCTAAAATAGAAAGCTGCTCAAACCTGGTAAATGAGAAGAATGAGGAGAATGAAACACCGAGTCTTCCAGAGAAAAACGAAAGTAACACAGAAATGGATGAAACTATGAATGATGCTGAGTTGAATGAAAACACAGAGAAGTCTGACGCTGGGGTCATTGTATTGGAAGAATAG 3249 0.3967 MYVGSSQARSVIREHEFYFPKKQKKIKKKKSGHIVSESKQDRIKFDVLLTSYEMINFDTSSLKPIRWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDSGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDPKESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWLYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKTQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATVDDEDEDGFLKAFKVANFEYVDEVEAAEEEAAQKRAMETVNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVDEDDLAGLEDVSSDGEDDNYEAELTDGDTNPVGITSAKRPYKKKARAADSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVRSASEHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQIGSQAQNGANLTNAEVPNNQSRENGGSDIAADGAQGSGDARSQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKASEEIKIESKPTNFQNYKSGDTDTQMIDQLPQVETIASEDISVACDNDANRLELVRLYNEMCKVVEENPMDLVQTSLAREPEDVNMVKNFPPLETICKDINRILTPTQEQPIAEMPKLNSDNKSGDVSPGEVLGSKSLPISQDNCKPDTSADNERQDMVIDSEPKIESCSNLVNEKNEENETPSLPEKNESNTEMDETMNDAELNENTEKSDAGVIVLEE. 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01056 1082 SMART helicmild6 276 360 IPR001650 -
Seca4g01056 1082 Pfam CHD subfamily II, DUF1087 482 540 IPR009463 -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 561 585 - -
Seca4g01056 1082 Gene3D - 163 461 IPR027417 -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 1010 1024 - -
Seca4g01056 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 157 IPR027417 -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 971 988 - -
Seca4g01056 1082 Pfam Helicase conserved C-terminal domain 247 360 IPR001650 -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 971 1082 - -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 1065 1082 - -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 1042 1057 - -
Seca4g01056 1082 SMART DUF1086_2 548 708 IPR009462 GO:0003677|GO:0006338
Seca4g01056 1082 CDD SF2_C_SNF 245 371 - -
Seca4g01056 1082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 411 IPR001650 -
Seca4g01056 1082 Pfam SNF2-related domain 36 224 IPR000330 GO:0005524|GO:0140658
Seca4g01056 1082 Pfam CHD subfamily II, SANT-like domain 572 705 IPR009462 GO:0003677|GO:0006338
Seca4g01056 1082 Gene3D - 675 852 - -
Seca4g01056 1082 Gene3D - 8 162 IPR038718 -
Seca4g01056 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 417 IPR027417 -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 782 797 - -
Seca4g01056 1082 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 1052 - -
Seca4g01056 1082 MobiDBLite consensus disorder prediction 782 812 - -
Seca4g01056 1082 SMART DUF1087_2 477 543 IPR009463 -
Seca4g01056 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 24 122 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01056 Seca-Chr4 17052537 17067581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01056 239 411 RAD5 or RAD16-like Gene Family AT5G22750 33.526 1.01e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g01056 SNF2_N 4.1e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01056 K11643 - gmx:100804203 1890.16