Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01055 ATGGATGATTCCAGTGACGAGTTTCCCATAGGAATGCGTGTTCTTGCCGTCGACGATGACCCCACTTGCCTCATGGTTTTGGAAACTCTACTCCGAAGATGTCAATATCACGTAACCACAACTAGTCAAGCAATAACGGCATTGACACTGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACAAAGCTAGTGATGAAGGGAATTTCTCACGGAGCCTGTGATTATCTGCTGAAACCTGTGAGAATAGAGGAACTAAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGATTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAATCAACTTTTGATAGCAGTAATGGAACAGGAAACACAGATCAAAATGGAAAAATGTCTAAAAAACGGAAGGATGAAGATGAAGATGAGGAGCAAGAGAATGGTCAAGACAATGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATCCTTGATATGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTAAAAAGAATTAGTTGCGTGGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATAAGTCCTATTTGAGAATGGGTTCTGTGAGTGGGTTTGGACATTTGCAAACACTGAGTGGTTCTGGACAGTTTCATAATAACGCTTTCAAATCCTTTCCATCTACTGGGATAATTAGTAGATTGAACACTCCTGCTGGTCTGAACATGCATGGATTTCCTTCTTCTGGAGTACTTCAGTTGGGTCAATCACAAAATTTGAACAACTCCTCTAATGATCAACTTAAGTTCCAGTCAGCCATAGTTCCTGCTAATCAGAATGGTGTTCAGGGAATGCCAGTGTCTGTAGGGCTTGATCAATTGCAAAACAATAAGGGTGTTACTTCTGTTCAAAACCTGACCACTGCTTTTGATGTGAAAACAACTTTTCCCATCTCAAATAAACTACCAGATCAAAGACCAAGAATAACCACCTCTGGCTCTCACAGACCACTTCTGGGTATCTCAAACAATGCCTTGATGTTGGAAACACACCCTCAAGATACACAAGCGGGTACAGGATATAAAAGTTCATCTTCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTCTCTTTGCTGGATCAAGGTAGGTATAGTGATAATTGGTCAAGTGCTGTGCAGCCATCTGGGATCCAGACAAATTTGTACCCTCCAAGTGAGTGTTTTAAACAGACAGCTATACCTCCTTCAGATAACATGACTTCTTTACCCTTGCAAGGGGGGAATCCCAGTGGTCCACCCATCACTTCACTGTCCAGTCAATCCCATGATTCAATGACAGCTATGCATTCCCAAGGAGTGATTTTTACTAATACACCTGGGCATATAAACAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTTGCCATTCAAATGTTATTGACGGATCAATAAACTCTTTGGCTCCAGTTAATGGTGCTGTTATTCCAGCAGGTCATACTCCAACTAACTCAACCTTACACAGGAACTTGGACTTTAATTTTTGTGATCCCTTGCAAATGAAGCATGATGGATTCCTGGAATCAACTGAAGACATCTCATTGAAACAACATGGGGGGAATATCATGAACCAACAGAAGTCCCAACAGAGTTGCTTCTCTAATAATCTTGGCTCACTGGAATACTTGGTCAGTTCAATGATGGAACAGGAGCAAGATAAGATAAAATTATTGGGTGGAGACCTCATTTGCCATAATTACTCTGGTGGGGTATCTATGTGA 2016 0.4211 MDDSSDEFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTSNLDKSTFDSSNGTGNTDQNGKMSKKRKDEDEDEEQENGQDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKRISCVANQQASMVAALGSADKSYLRMGSVSGFGHLQTLSGSGQFHNNAFKSFPSTGIISRLNTPAGLNMHGFPSSGVLQLGQSQNLNNSSNDQLKFQSAIVPANQNGVQGMPVSVGLDQLQNNKGVTSVQNLTTAFDVKTTFPISNKLPDQRPRITTSGSHRPLLGISNNALMLETHPQDTQAGTGYKSSSSSVASQHSEFSFSLLDQGRYSDNWSSAVQPSGIQTNLYPPSECFKQTAIPPSDNMTSLPLQGGNPSGPPITSLSSQSHDSMTAMHSQGVIFTNTPGHINSNVPFQGWDDHNQDATCHSNVIDGSINSLAPVNGAVIPAGHTPTNSTLHRNLDFNFCDPLQMKHDGFLESTEDISLKQHGGNIMNQQKSQQSCFSNNLGSLEYLVSSMMEQEQDKIKLLGGDLICHNYSGGVSM. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01055 671 PIRSF RR_ARR_type-B 1 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca4g01055 671 Gene3D - 187 250 - -
Seca4g01055 671 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Seca4g01055 671 SUPERFAMILY Homeodomain-like 188 248 IPR009057 -
Seca4g01055 671 MobiDBLite consensus disorder prediction 135 192 - -
Seca4g01055 671 SMART REC_2 12 124 IPR001789 GO:0000160
Seca4g01055 671 MobiDBLite consensus disorder prediction 145 161 - -
Seca4g01055 671 Gene3D - 11 148 - -
Seca4g01055 671 Pfam Myb-like DNA-binding domain 193 243 IPR001005 -
Seca4g01055 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Seca4g01055 671 CDD REC_typeB_ARR-like 14 128 - -
Seca4g01055 671 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Seca4g01055 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 333 IPR045279 GO:0009736
Seca4g01055 671 FunFam Two-component response regulator 187 250 - -
Seca4g01055 671 FunFam Two-component response regulator 12 171 - -
Seca4g01055 671 SUPERFAMILY CheY-like 11 135 IPR011006 -
Seca4g01055 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01055 Seca-Chr4 17044394 17049953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01055 3 431 Response Regulator Gene Family AT2G25180 55.125 2.44e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca4g01055 Response_reg 2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01055 - K14491 gmx:100809002 1028.08