Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01054 ATGGAAACACAGAGCCATGAGCCTTATTATCTCTCTGCTGAAGAGGCTCCACCAAGTCCAACTACACCACCATTGCAGAATCCACATGAAAAGAAACAACAACTTGAGGAAGAAGATAATCAAGAAAAGGAAGCAAAGTTAGATACTATATTGGATCTGAATGTCCCTGGTGATGATGATAATTGTTCTCTTGAGTGCTTGGATTTGTCCAAGGAAGAAAACCCTTGTGGTAATAATTCTGATGGAGCAGAGCCAAGAGTGTTCTCTTGTAACTATTGCCAGAGAAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAGAAGAGGTCAGAGATTAGCAACAAACATGATGATGGCTTCAACATCTTCCTCTTTTGGGAATATTCCCTTTCTTCATAGGTATCCAAGTATGGCATCACTACCCCTCCATGGTTCTTTTAGTAATAGACCACTTGGAATTCAGGCTCACTCCATGATTCAAAAGCCTTCTCATTTTGGGTTTGGAAGCAGTTATGGACAACAACATGGTTGGTCAAGACCACCCCTTATTGATCAACAACCTGGAATAGGGAAACTAGTCATGATGGAAAGTTCTCACAAAACAGGGTTATCATCAAGAGCTAGTAGCAGTAGTGTTGGTAGATTTGAAGTGGTAAAGAACATGATCAATTCAACTTCCAATGAAGAAATTAGTGGATATAATTCAACTCGTTTGAAGACTAATCAAGAAGAGATGAGGCACCTTGACTTATCCTTAAAGCTCTAA 798 0.401 METQSHEPYYLSAEEAPPSPTTPPLQNPHEKKQQLEEEDNQEKEAKLDTILDLNVPGDDDNCSLECLDLSKEENPCGNNSDGAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIARRGQRLATNMMMASTSSSFGNIPFLHRYPSMASLPLHGSFSNRPLGIQAHSMIQKPSHFGFGSSYGQQHGWSRPPLIDQQPGIGKLVMMESSHKTGLSSRASSSSVGRFEVVKNMINSTSNEEISGYNSTRLKTNQEEMRHLDLSLKL. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01054 265 Gene3D Classic Zinc Finger 70 137 - -
Seca4g01054 265 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 265 IPR044246 GO:0009788
Seca4g01054 265 FunFam Zinc finger protein 2 67 135 - -
Seca4g01054 265 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Seca4g01054 265 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Seca4g01054 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Seca4g01054 265 MobiDBLite consensus disorder prediction 30 46 - -
Seca4g01054 265 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01054 Seca-Chr4 17002656 17003453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01054 36 265 C2H2 Transcription Factor Family AT5G10970 41.803 3.84e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g01054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01054 - - gmx:100819663 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01054 4 17002656 17003453 Seca4g01054 4 17002656 17003453 PCT