Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01047 ATGGCCAGACCACAACAGAGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCAGAAATTAGACACCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAAGATGCAGCTAGAGCTTATGATGAAGCAGCAAGGCTAATGTGTGGTACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCATCTCAATCATCATCTTCTAAGCTTCTCTCAGCTACTTTAACAGCTAAACTCCATAGATGCTACATGGCTTCTCTTCAAATGACTAGACAAACACAATCACTTCTTCCTGAGCCTCAGAGAACAACAGTTTCACCTAATGTCATTTCCACAACCAACATTCCCATGAAAAGTGGTGAAACTGATGCAATGATGTTGCCACAGAAGAGACAACAGGTGAAGGAGGAGCAAGAATCAGAGGGGAATTGGGTTTTCAAGAAAGTTAAAGTGGAAAGTTCTCATCAGCAATTCATGCCACTTGAGGAAGATCATATAGAGCAAATGATAGAGGAGCTTCTTCATTATGGTTCTATTGAGCTCTGTTCTGTTATTCCACCACAGGCTCTTTGA 594 0.4209 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRQTQSLLPEPQRTTVSPNVISTTNIPMKSGETDAMMLPQKRQQVKEEQESEGNWVFKKVKVESSHQQFMPLEEDHIEQMIEELLHYGSIELCSVIPPQAL. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01047 197 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Seca4g01047 197 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Seca4g01047 197 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Seca4g01047 197 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Seca4g01047 197 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca4g01047 197 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca4g01047 197 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Seca4g01047 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 142 - -
Seca4g01047 197 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Seca4g01047 197 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01047 Seca-Chr4 16794032 16794865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01047 1 197 AP2-EREBP Transcription Factor Family AT5G25190 64.467 4.06e-81 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g01047 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01047 - - gmx:100819158 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01047 4 16794032 16794865 Seca4g01047 4 16794032 16794865 ECH
Seca4g01047 4 16794032 16794865 Seca4g01047 4 16794032 16794865 PCT