Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01028 ATGGGGAAGCCAACAGGGAAGAAGAAGAAGAAGGATGCTGTAACACCGAGGGCTGCAAATGCAAACGGCAAACCTTCCAAACCTTTCGATGAAGACACAGCGATATTCATCAACATGTCACAAGAGCTCAGGGAAGAAGGTAACAAGCTCTTGCAGAAGAAGGACCATGAAGGCGCTATGCTCAAGTATGAGAAAGCACTCAAGCTCCTTCCAAATAACCACATTGATGTTGCACACCTTCGCACCAATATGGCCACGTGTTACATGCAATTAGGTCTCGGAGAATACCCTCGAGCCATTAATCAATGCAATTTGGCTCTACAAGTTTCACCTAAATACAGTAAAGCTCTTTTGAAAAGAGCAAATTGCTATCGAGCGCTCAATCGATTCGATTTAGCAATCAGGGATGTTCATCTTGTTTTGGCTGTGGAACCTAATAATGTTGCTGCTTTGGAGTTTCTGGAGAGTCTCAAGATGACAATGGAAGAAAAGGGTATCACTGTTGATGATGACAAGGTGATTGCTTTTGATTATGTACAGCACCCTCCTGCAAGTGCTCCTCGTTTGCAGAAGAATGTTGTTAGAGAGAAAGTAAAGAAAAAGAGAGGTAAGAAAATTGAGGATAAGGTGGTTGTTGAGGAACATGTCAGTGCTGTTAAGGATGAACAAGTTCTTTCAAATGAAATTGAGCAAGAAAAAAGGGTAGTGGGACCTGTGAAGGAAGAAAAAGCTGTTGCAAGGACAGTGAAGTTGGTGTTTGGAGAGGATATAAGGTGGGCTCAGTTGCCAGGGAATTGTAGTTTGAAGTTGGTGAGGGATATAGCTAGGGATCGATTTCCTGGTTTGAAGGGTGTTCTTGTGAAGTATAGGGATCAAGATGGTGATTTGGTTACAATCACTACTACTGATGAACTAAGGAGAGCTGAATCTTCAAGTTCCAAGCTGGGTTCTATGAGACTTTATATTACAGAAGTCAATCCAGACCAAGAACCTTCTTATGATGGAATAACCAATGAGGATGGGGTGCTAATAGATGGTGAGAAACCAGGTGATGGTATTGAGAATGGGGGTATGGAAGAAGGGAAAGGTGGAGTAAATAGGATGACTTCTGTGGAGGACTGGCTTATCCAGTTTGCAAAGTTGTTCAAGAACCATGTAGGTTTTGAATCTGATTCATATCTTGATATTCATGAGCTTGCTATGAAGCTATATGCAAAAGCAATGGAGGACACTGTAAAGGGTGATGATGCTCAAGAACTTTTTGAAATTGCTGCAGATAAATTTCAAGAGATGGCGGCTTTGGCATTGTTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAAACAAGGTTTCTTTTCAGAGGATGGGTCTAGAGAATTTTCATTTGAGCATATTAAAGCTGGTTATGAGTGGGCACAAAAGGAGTACATGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCAGATTTTTATGAAGGATATCTTGCTCTTGGGCATCAACAGTTTGAGCAAGCAAGGCTCTGTTGGTGTTATGCAATGGCATGCAAGATGGATATAGAAGGTGGTCCTTCTGATGAGGTTCTACAACTCTATAACAAGGCAGAGGACAACATGGAGAAAGGAATTTTGATGTGGGAGGAGGTTGAGGAGCAGCGATTAAATGGAATATCCAAATCAGATAAATATAAAGCACAGTTAGAGAAAATGGGCTTGGATGATAGTCTTTTCAAGGATGCTTCTGATGATCAAGCTTCAAAGCAGGCTGCAAAGATGAGGTCACAGATATATCTTTTATGGGGTACCTTATTGTATGAACGTTCTGTTGTGGAATATAAGCTAGGCCTTCCAACATGGGAAGAATGTTTGGAGGTTGCAGTTGAGAAGTTTGAACTAGCTGGAGCTTCTGCAACAGATATTGCTGTCATTATAAAGAATCATTGCTCACATGAAACAGCACTTCAAGGGTTTAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCAGGGGTGGCAGTTTGGTGTTCCATCGTTTCGACTTGAACCATTATTTCGTCGGCATGTTCCTAAACTCCATTACATCTTGGAGCAATTCTAA 2118 0.4131 MGKPTGKKKKKDAVTPRAANANGKPSKPFDEDTAIFINMSQELREEGNKLLQKKDHEGAMLKYEKALKLLPNNHIDVAHLRTNMATCYMQLGLGEYPRAINQCNLALQVSPKYSKALLKRANCYRALNRFDLAIRDVHLVLAVEPNNVAALEFLESLKMTMEEKGITVDDDKVIAFDYVQHPPASAPRLQKNVVREKVKKKRGKKIEDKVVVEEHVSAVKDEQVLSNEIEQEKRVVGPVKEEKAVARTVKLVFGEDIRWAQLPGNCSLKLVRDIARDRFPGLKGVLVKYRDQDGDLVTITTTDELRRAESSSSKLGSMRLYITEVNPDQEPSYDGITNEDGVLIDGEKPGDGIENGGMEEGKGGVNRMTSVEDWLIQFAKLFKNHVGFESDSYLDIHELAMKLYAKAMEDTVKGDDAQELFEIAADKFQEMAALALFNWGSVQMSRARKQGFFSEDGSREFSFEHIKAGYEWAQKEYMKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKMDIEGGPSDEVLQLYNKAEDNMEKGILMWEEVEEQRLNGISKSDKYKAQLEKMGLDDSLFKDASDDQASKQAAKMRSQIYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASATDIAVIIKNHCSHETALQGFKIDEIVQAWNEMYDAQGWQFGVPSFRLEPLFRRHVPKLHYILEQF. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01028 705 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Seca4g01028 705 SMART PB1_new 246 325 IPR000270 GO:0005515
Seca4g01028 705 SMART tpr_5 461 494 IPR019734 GO:0005515
Seca4g01028 705 SMART tpr_5 40 73 IPR019734 GO:0005515
Seca4g01028 705 SMART tpr_5 78 113 IPR019734 GO:0005515
Seca4g01028 705 SMART tpr_5 114 147 IPR019734 GO:0005515
Seca4g01028 705 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Seca4g01028 705 CDD PB1 248 323 - -
Seca4g01028 705 SUPERFAMILY TPR-like 30 162 IPR011990 GO:0005515
Seca4g01028 705 Gene3D - 240 325 - -
Seca4g01028 705 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g01028 705 SUPERFAMILY CAD & PB1 domains 245 334 - -
Seca4g01028 705 PANTHER PROTEIN CLMP1 1 703 IPR044517 -
Seca4g01028 705 Pfam PB1 domain 247 323 IPR000270 GO:0005515
Seca4g01028 705 SUPERFAMILY TPR-like 401 509 IPR011990 GO:0005515
Seca4g01028 705 Gene3D Tetratricopeptide repeat domain 36 172 IPR011990 GO:0005515
Seca4g01028 705 ProSiteProfiles PB1 domain profile. 246 325 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01028 Seca-Chr4 16389281 16391504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01028 24 147 Calmodulin-binding Proteins AT3G25230 27.820 3.08e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01028 K26538 - gmx:100805760 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01028 4 16389281 16391504 Seca4g01028 4 16389281 16391504 PCT