Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01006 ATGTTTCAAGACATAACGACATTGTTGTTGGATCACAAAGCGTTTAAAGATACTGTCGACATTTTTGTCGATCGTTACAGAGACATGCACATTTCCGTTGTTGCCGGAATTGAAGCAAGGGGATTCATGTTTGGTCCTGCAGTTGCGTTGGGCATTGGTGCAAAGTTTGTCCCTTTACGCAAACCTGGGAAGCTGCCAGGTGAAGTGATTGCCGAAAAATATTCTCTAGAGTATGGAACTGATTGTTTGCAGCTGCATGTTGGCGCTGTCCAGCCTGGTGAGCGAGCCATAGTTGTTGATGACTTAGTGGCCACAGGGGGAACTCTGTCAGCAGGAATAAGACTTCTAGGTGATTTGCAAGCTTATTTTTATTGTAGTTTTTACTGCTTCGTATACATTCTTTTCTCCTCCTTCTTTTTCACCTGTTATTGTTCATTGTATATGGTCCCAAATACACTATATGGTTTTTTCAACTTATTTTGTAGAACGTGTTGGTGCTGA 501 0.4192 MFQDITTLLLDHKAFKDTVDIFVDRYRDMHISVVAGIEARGFMFGPAVALGIGAKFVPLRKPGKLPGEVIAEKYSLEYGTDCLQLHVGAVQPGERAIVVDDLVATGGTLSAGIRLLGDLQAYFYCSFYCFVYILFSSFFFTCYCSLYMVPNTLYGFFNLFCRTCWC. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01006 166 Gene3D - 1 134 IPR029057 -
Seca4g01006 166 CDD PRTases_typeI 19 121 IPR000836 -
Seca4g01006 166 SUPERFAMILY PRTase-like 1 120 IPR029057 -
Seca4g01006 166 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 1 122 - -
Seca4g01006 166 FunFam Adenine phosphoribosyltransferase 1 133 - -
Seca4g01006 166 Pfam Phosphoribosyl transferase domain 11 118 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01006 Seca-Chr4 16118158 16122644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01006 1 141 PRT Gene Family AT5G11160 68.085 4.29e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01006 K00759 - gmx:100499904 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01006 4 16118158 16122644 Seca4g01006 4 16118158 16122644 ECH
Seca4g01006 4 16118158 16122644 Seca4g01006 4 16118158 16122644 PCT