Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01005 ATGAAGAGGATGTATATGTTTTTCTACTGTGAGTATGCAAAATTCATGGGGTTTGCTGTTAGGAAAGATGATGTGTATAGAGATCGTAATGATGTAGTTACAATGAGACAGTTGGTATGTAACAGACAGGGAGAGAGAAGAACAAAATGTCAAGCAAGGCTCCGAATTCATTTAGATTATAAGAGTAAGAAGTGGAGGGTTGGTTCTTTTGAGTCGAGTCTCAACCATGAATTGACTCCTGCGAGTACGGTACATTTGCTATCAACTTATTATGGGTTGAGTGTAGCTGATAAGGTACATGTTGATGGTCCTCATTTATTCAGATTTTGGATTTTTTAA 339 0.3717 MKRMYMFFYCEYAKFMGFAVRKDDVYRDRNDVVTMRQLVCNRQGERRTKCQARLRIHLDYKSKKWRVGSFESSLNHELTPASTVHLLSTYYGLSVADKVHVDGPHLFRFWIF. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01005 112 Pfam FAR1 DNA-binding domain 8 79 IPR004330 -
Seca4g01005 112 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01005 Seca-Chr4 16112216 16112612 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g01005 FAR1 8.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01005 - - ccaj:109792835 101.293