Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00977 ATGGTGGCTTTCGGCGGGAAAAAAGTTGGCCAAATGGTCGTCGGCTTCGGCGGCAGCGGTCTCGGCCAGGTCGTCATCGCCGTCACAGTCTCCTTCCTTGTCCGCATCTTCTCTGCTCCCGGCCCCGCCCTCTTGCCGGAGAACGACGATGTGCCGAACAACGATTCCCACAACGGTGAAACTTCGCCCTCCGGAAAGGTCACGCCGGTTACAATCCGCTGGAACAGTATCAGTTGTTCCCTTTCTGATAAATCCTCCAAGTCCGAGGATCTCTTTTTCTCACAGCTCACTGTGCGGGAAACATTGTCTCTTGCTACAGAACTCCAGCTTCCAGACCTATCTTCCGCAGAAGAGAGAGATGAATACGTGAACAATCTCCTTTTCAAACTAGGCTTGATCAGTTGTGCTGATACCAATGTCGGTGATGCAAAAGTTCGTGGAATTAGCGGTGGTGAAAAGAAACGCTTATCAATGGCATGTGAATTGCTTGCAAGCCCGTCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACACTCCAACAGCTTGCACAAGATGGTCATACTGTAATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTATAGTAAATTCGATGACATTGTCTTGCTGACTGAGGGTTCACATGTTTATGCTGGTCCTGCTCGTGATGAAGCATTGGCATACTTCTCAAGATTCGGGTACAACTGCCCAGATCATGTAAATCCTGCTGAATTTTTGGCTGATCTTATATCCATCGACTATAGTTCTGCTGATAGTGTCTATTCCTCTCGAAAAAGGATTGATGGGCTTGTGGAGTCATTCTCACAAAGACTATCTACAGTAATATATTCAACTCCAATTACTATAGACGATCTCTCAAAAAGTAGAAAGCAAATCAGAAAGAGGACTGTAGCAAAGAAGAAAGGAGGTTGGTGGAAGCAATTTTGGTTGCTCCTTAAACGAGCTTGGATGCAGGCTTCCCGAGATGCACCTACCAACAAACTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTTTTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCTAGTTGCTGCAATAAATACAGCCATGGCTGCTCTCACAAAGACTGTAGGCGTGTTTCCCAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGCTCCTATTCATTGGGTCCATATCTGTTTTCGAAATTGTTGACTGAGATTCCCATCGGAGCAGCATTTCCATTAATGTTTGGTGCAGTTTTGTATCCAATGGCACGTCTTCATCCTACTTTGACGAGATTTGGGAAGTTTTGTGGAATTGTCACTGTGGAATCTTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATTGTATTTGGTGGCTACTATGTCAATCCTGAGAATACCCCAATCATCTTCCGCTGGATTCCTAGTGTTTCTCTGATTAGATGTGGCCTTCAATTTGATCATCAGCATTCATTTGATGTTCAAACTGGAGAACAGGCATTGGAGCGTATCTCCTTTGGAGGAAGTAGGATTAGGGATACGGTGGTAGCACAAAGTAGAATACTGTTATTTTGGTATTGCACCACCTACCTTCTCCTTGAGAGAAACAAGCCCAGATACCAGCAACTTGAAACAACCCCTCTTGACCATGACGAACCCAATTTAAAACTTGAGGAGTTCAATTCTAAACAAGTTCATCAGGCACTTGAAGCTACACCAGTCAGCCAAATTGGATTGGTTCCGACCAGTCCCTTGAGTCACCTGAAGTAG 1899 0.4518 MVAFGGKKVGQMVVGFGGSGLGQVVIAVTVSFLVRIFSAPGPALLPENDDVPNNDSHNGETSPSGKVTPVTIRWNSISCSLSDKSSKSEDLFFSQLTVRETLSLATELQLPDLSSAEERDEYVNNLLFKLGLISCADTNVGDAKVRGISGGEKKRLSMACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIVLLTEGSHVYAGPARDEALAYFSRFGYNCPDHVNPAEFLADLISIDYSSADSVYSSRKRIDGLVESFSQRLSTVIYSTPITIDDLSKSRKQIRKRTVAKKKGGWWKQFWLLLKRAWMQASRDAPTNKLRARMSIASAIIFGSVFWRMGKSQTSIQDRMGLLLVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLTEIPIGAAFPLMFGAVLYPMARLHPTLTRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRCGLQFDHQHSFDVQTGEQALERISFGGSRIRDTVVAQSRILLFWYCTTYLLLERNKPRYQQLETTPLDHDEPNLKLEEFNSKQVHQALEATPVSQIGLVPTSPLSHLK. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00977 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 248 IPR003439 GO:0005524
Seca4g00977 632 MobiDBLite consensus disorder prediction 51 66 - -
Seca4g00977 632 Pfam ABC-2 type transporter 205 262 IPR043926 GO:0140359
Seca4g00977 632 ProSitePatterns ABC transporters family signature. 148 162 IPR017871 GO:0005524|GO:0016887
Seca4g00977 632 Gene3D - 70 240 IPR027417 -
Seca4g00977 632 MobiDBLite consensus disorder prediction 45 66 - -
Seca4g00977 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 234 IPR027417 -
Seca4g00977 632 Pfam ABC-2 type transporter 325 527 IPR013525 GO:0016020|GO:0140359
Seca4g00977 632 Pfam ABC transporter 89 175 IPR003439 GO:0005524
Seca4g00977 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 89 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00977 Seca-Chr4 15751386 15760586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00977 112 225 Calmodulin-binding Proteins AT2G36910 31.579 1.09e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00977 K05681 - cpap:110813362 958.362