Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00973 ATGAAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGATAAGGCAAGAGTTGCAAGGACCAGAATGATAGGAAATCAACCCTCCAACCCGAAGTGGAAGGAAACCTTTGAAATCTATTGTGCTCATAATGTCTCAAACATTATATTCACTGTCAAAGATGGTAATCCAATTGGTGCAACTCTAATTGGAAGAGCTTATGTCCCTGCTAACCATGTTATCAAGGGCCCTATAATTAACAGATGGGTTGAGATAATAGATGATGAAGATCATCGTCCTGTTAGGGGTCACTCTAAAATTTGTGTCAGTGTGCAATTCACAAGTGTTACTGAGGATAAAAAATGCCAATGGTCTCAAGGAATATGCATGCCATTTATGGGAGTTCCTCGTACATTTTTCAACCAAAGAGAAGGTTGTAATGTCACTTTATACCAAGATGCACATGCTCCTGATAATGCACTCCCTTGGATTCCAATTTCAGGTACAAAATATTATGTGCCTGGGAGATGTTGGGAGGACATTTACAATGCCATTGTGGAAGCTAAGTACTTTATTTATATAACTGGTTGGTCTGTGTATACTGAAATAACCTTGATTAGGGATGCAAAGAATTTAAAAACAAGTGTCAAACTTGGGGAGTTGCTTAAGATGAAAGCTGATGAAGGGGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTTCCAGACTTGGAAAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGATTATTTTAGAAACACAAAGGTGCATTGTGTTTTATGCCCACGTGACCCTGGTGGTGGAAGAAGCATGGTTCAAGGTTTTCAAATCTCAACAATGTTTACTCACCACCAAAAGACTATAATACTTGATAGCAAAATTGAAGGATTGAAAAAGAGAAAGGTCATAAGTTTCATAGGTGGTCTTGATCTTTGTGATGGGAGATATGATACTAGGGAACATCCTTTATTTTCAACTCTGAATACAGTCCATCATGATGATTTCCATCAGCCAAATTTCCCAAGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGACCTATTGCATGGGATGTCTTGTATAATTTTGAGCAAAGGTGGGAGAAGCAAGCTGGGAAGGAATTCCAACAATTCCTATTCCCACTTGATGTGCTTGATAGATTTCTAGTCCATCCATCTGAAGCAGTGCCATCAGAAGATGGGGACATGTGGAATGTTCAGTTGTTTAGGTCCATTGATGGTGGTGCTGTCTCTAACTTCCCTCAAGCCCCAGATGAAGTTGCTGAATTAGGCCTTGTTAGTGGCAAAAATAACATCATTGATAGAAGTATTCAGGATGCTTATATAAATGCTATTAGGAGAGCAAAGAATTTCATTTACATTGAAAACCAGTATTTCCTAGGGAGTTCATATGGTTGGAAACCATCTGAGTCTGTGTCTGATATAAAAATTGAGGATATTAATGCTTTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAAAGGTTTGTTGTGTATGTGGTGATACCAATGTGGCCAGAAGGTGTACCTGAAAGTGTTTCTGTTCAGGTAATATTAGGTTTGCAAAGAAGGACTATGGAGATGATGTATTCTGACATTGCTGATGCCATAAAGAAGAAGAACATTGAAGCACACCCTAGGGATTATTTGACATTTTTTTGCCTTGGCAAGAGGGAGAGAAAAACAGAAGGAGAATATATTCCTCCAGAGGAACCAGAACCTGACAGTGACTATCAAAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATTGTGGATGATGAATACATAATCATTGGTTCTGCTAACATCAACCAGAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGAGCATTCCAACCACATCATCTAACATCCCTTGGCCCAAAAAGACCACAAGGTCAGATTTATGGGTTCAGGAGAGCATTATGGTATGAGCATATTGGGGATTCTCATGAGGCTTTTGATGAGCCTGAAAGTGAGGAATGTGTGAAACTTGTGAATGGTGTTGCTGAGATGAACTGGGAATTATACTCCAAAGACACACTTGATGAAAGTGATCAACCAGTTCACCTTTTGAGATATCCTATAGAAGTGATTGGGATGGGTCTCTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGGAGGACTAGGATGTTAGATGATCAACCCTCTAACCCCAACTGGAATGAGACCTTTCACATATATTGTGCCCATTTAATCTCCAACATTATATTCACTGTCAAACAAAATAACCCCATTGGGGCTACTCTAATTGGAAGAGCTTATGTCCCTGTTGGCCAAGTTATTAAGGGCAATGTAGTGGATACATGGGTCCAGATATTAGATGAGAACCATCAACCCATACCAAGTGGCTCTAAAATTCATGTTAGAATGCAATACTTTGATGTCAAGAATGACTCAAACTGGTCTCAAGGAATAAAGAGTCCAGGATTTCAAGGAGTTCCACACACATTCTTTAGTCAAAAAACTGGTTGCAGAGTTACTTTGTACCAAGATGCTCATATTGCAGATGGTTTTGTGCCTAGGATCCCATTGTATGGAAAAAAACCTTATGAGCCTGGGAGATGCTGGGAGGATATTTACAATGCCATTATGGATGCTAATTACTTTATTTACATAACTGGTTGGTCTGTGTATACTGAAATAACCTTGATTAGGGACTCAAGGAAATCAAGTATTAAACTTGGGGATTTGCTTAAGATGAAAGCAGATGAAGGTGTTACTGTTCTTATGCTTATTTGGGATGACAGAACCTCTGTTCCAGACTTGAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAACTGCTGAATTTTTTAGAAACACAAAGGTGCATTGTGTTTTGTGTCCACGTGACCCTGGTGGTGGAAGAAGCATGGTTCAAGGTTTTGAAATCTCAACCATGTTTACTCACCACCAAAAGACTATTGTACTTGATAGCCAAGTTTATGGAGCTGTGGGAAGATGGCAAAAGAGAACAATCTCAAGCTTTATAGGTGGTATTGATTTGTGTGATGGAAGATATGATACACAAGAACATCCTCTATTTTCAACTCTTAACACAGTCCATCATGATGATTTCCATCAACCAAATTTCCCAGGTGCTTCAATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGACATATTGCTTGGGATGTATTGTGCAATTTTGAGCAAAGATGGAGGAAGCAAGCTGGGAAGGAACTCCAACAATTCCTACTCCCTTCAAGCATGTTTGATGAATATCTTGTCCCTAAATCAAGTGTAGCAACCACAAATGAAAATGAGACATGGAATGTTCAAGTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGTTTCCCACAAGACCCTGATGAAGCTGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGCATTCAGGATGGTTACATAAATGCTATTAGGAGAGCAAAGAATTTCATCTACATTGAGAATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAAGGATCTGATATTAAAGTTGAGGATATAAATGCTTTGCATCTTATACCAAAGGAGTTGTCATTAAAGATTGTTAGCAAGATTGAAGCAAGAGAGAGGTTTTCTGTCTACATTGTCATCCCAATGTGGCCAGAAGGTGTGCCTGAGAGTGAATCAGTTCAAGCTATATTAGATTGGCAAAGGAGGACAATGGAGATGATGTATACTGATATTGCTGAAGCCATCCGAAGAATGAGAATTAGAGCACACCCTAGGGATTACTTGACTTTTTTCTGCCTTGGAAATCGTGAGGGTATGGAAGGTAAAGAATATATCCCTTTGGAGACACCAGAGCCTGATAGTGATTATAGTAGAGCACAAAAGTCCAGGCGATTTATGATCTATGTTCATGCAAAGATGATGATAGACTTTTGCTTAATTTATTCAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAACCAAAGATCAATGGATGGTGCAAGGGACAGTGAGATTGCAATGGGAGCATTCCAACCACGCCATTTAAGTGTAACATCAAGAGGACCACCAAAAGGACAGATATATGGATTGAGACGTGCATTATGGTATGAGCACCTTGGGGATGATGGTGATACAAACATCTTTGACAATCCAGAAAGTGTGAACTGCATCAAGCTTGTGAATCGTCTAGCTGAGACCAACTGGGACATATACTCACAGGAAACATTTGATGAACATAGAGCATTTCACCACCTCATGCGTTACCCTGTAGAAGTAACATATGATGGAGCCATAACAAACCTTCCAGGACTTGAATGTTTTCCTGATACCAAGGCTCGGATTCTCGGTTCCAAAGCACAGTACCTTCCTCCAATTCTCACCACCTAG 4551 0.3986 MKIVGTRLYATVDLDKARVARTRMIGNQPSNPKWKETFEIYCAHNVSNIIFTVKDGNPIGATLIGRAYVPANHVIKGPIINRWVEIIDDEDHRPVRGHSKICVSVQFTSVTEDKKCQWSQGICMPFMGVPRTFFNQREGCNVTLYQDAHAPDNALPWIPISGTKYYVPGRCWEDIYNAIVEAKYFIYITGWSVYTEITLIRDAKNLKTSVKLGELLKMKADEGVNVLMLVWDDRTSVPDLEKDGLMATHDQETADYFRNTKVHCVLCPRDPGGGRSMVQGFQISTMFTHHQKTIILDSKIEGLKKRKVISFIGGLDLCDGRYDTREHPLFSTLNTVHHDDFHQPNFPSASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQAGKEFQQFLFPLDVLDRFLVHPSEAVPSEDGDMWNVQLFRSIDGGAVSNFPQAPDEVAELGLVSGKNNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKPSESVSDIKIEDINALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGVPESVSVQVILGLQRRTMEMMYSDIADAIKKKNIEAHPRDYLTFFCLGKRERKTEGEYIPPEEPEPDSDYQRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHLTSLGPKRPQGQIYGFRRALWYEHIGDSHEAFDEPESEECVKLVNGVAEMNWELYSKDTLDESDQPVHLLRYPIEVIGMGLYATVDLDKARVGRTRMLDDQPSNPNWNETFHIYCAHLISNIIFTVKQNNPIGATLIGRAYVPVGQVIKGNVVDTWVQILDENHQPIPSGSKIHVRMQYFDVKNDSNWSQGIKSPGFQGVPHTFFSQKTGCRVTLYQDAHIADGFVPRIPLYGKKPYEPGRCWEDIYNAIMDANYFIYITGWSVYTEITLIRDSRKSSIKLGDLLKMKADEGVTVLMLIWDDRTSVPDLKKDGLMATHDQETAEFFRNTKVHCVLCPRDPGGGRSMVQGFEISTMFTHHQKTIVLDSQVYGAVGRWQKRTISSFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGHIAWDVLCNFEQRWRKQAGKELQQFLLPSSMFDEYLVPKSSVATTNENETWNVQVFRSIDGGAASGFPQDPDEAAELGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSSYGWKGSDIKVEDINALHLIPKELSLKIVSKIEARERFSVYIVIPMWPEGVPESESVQAILDWQRRTMEMMYTDIAEAIRRMRIRAHPRDYLTFFCLGNREGMEGKEYIPLETPEPDSDYSRAQKSRRFMIYVHAKMMIDFCLIYSVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHLSVTSRGPPKGQIYGLRRALWYEHLGDDGDTNIFDNPESVNCIKLVNRLAETNWDIYSQETFDEHRAFHHLMRYPVEVTYDGAITNLPGLECFPDTKARILGSKAQYLPPILTT. 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00973 1516 SMART pld_4 1017 1057 IPR001736 GO:0003824
Seca4g00973 1516 SMART pld_4 1350 1384 IPR001736 GO:0003824
Seca4g00973 1516 SMART pld_4 618 645 IPR001736 GO:0003824
Seca4g00973 1516 SMART pld_4 285 321 IPR001736 GO:0003824
Seca4g00973 1516 SUPERFAMILY Phospholipase D/nuclease 1196 1430 - -
Seca4g00973 1516 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 285 321 IPR001736 GO:0003824
Seca4g00973 1516 SUPERFAMILY Phospholipase D/nuclease 848 1134 - -
Seca4g00973 1516 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 618 645 IPR001736 GO:0003824
Seca4g00973 1516 Gene3D C2 domain 741 855 IPR035892 -
Seca4g00973 1516 Gene3D C2 domain 5 119 IPR035892 -
Seca4g00973 1516 FunFam Phospholipase D delta 896 1135 - -
Seca4g00973 1516 Pfam C2 domain 8 85 IPR000008 -
Seca4g00973 1516 Pfam C2 domain 744 821 IPR000008 -
Seca4g00973 1516 Pfam Phospholipase D C terminal 693 743 IPR024632 -
Seca4g00973 1516 Pfam Phospholipase D C terminal 1434 1506 IPR024632 -
Seca4g00973 1516 SMART C2_3c 722 819 IPR000008 -
Seca4g00973 1516 SMART C2_3c 3 83 IPR000008 -
Seca4g00973 1516 SUPERFAMILY Phospholipase D/nuclease 457 700 - -
Seca4g00973 1516 CDD C2_plant_PLD 734 843 - -
Seca4g00973 1516 SUPERFAMILY Phospholipase D/nuclease 129 397 - -
Seca4g00973 1516 Gene3D Endonuclease Chain A 427 662 - -
Seca4g00973 1516 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1365 1384 IPR001736 GO:0003824
Seca4g00973 1516 Gene3D Endonuclease Chain A 1168 1399 - -
Seca4g00973 1516 Pfam Phospholipase D Active site motif 619 645 IPR001736 GO:0003824
Seca4g00973 1516 Pfam Phospholipase D Active site motif 285 321 IPR001736 GO:0003824
Seca4g00973 1516 Pfam Phospholipase D Active site motif 1017 1057 IPR001736 GO:0003824
Seca4g00973 1516 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1017 1057 IPR001736 GO:0003824
Seca4g00973 1516 CDD PLDc_pPLD_like_1 162 335 - -
Seca4g00973 1516 FunFam Phospholipase D delta 162 395 - -
Seca4g00973 1516 Gene3D Endonuclease Chain A 895 1155 - -
Seca4g00973 1516 PANTHER PHOSPHOLIPASE D 743 1505 IPR015679 -
Seca4g00973 1516 ProSiteProfiles C2 domain profile. 687 820 IPR000008 -
Seca4g00973 1516 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 109 IPR035892 -
Seca4g00973 1516 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 743 845 IPR035892 -
Seca4g00973 1516 ProSiteProfiles C2 domain profile. 1 84 IPR000008 -
Seca4g00973 1516 Gene3D Endonuclease Chain A 161 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00973 Seca-Chr4 15710989 15718787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00973 6 743 Phospholipase D Gene Family (Wang group) AT3G15730 64.382 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00973 K01115 - gmx:100791688 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00973 4 15710989 15718787 Seca4g00973 4 15710989 15718787 ECH