Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00972 ATGGTACAAGCAAGGAAGTTCAGAGGAGTGAGGCAGAGACAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTGCTGAAGAGAAGGGTGTGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCAGCTATTTTGATGAGTGGACAGAATGCAAAGACCAATTTCCCAAATTCAAAGAATCAAGCTGAAGATGCTACACCTAATAATTGTGGTGGTGATGATACTTTCTTATCTCCCAAGGCTCTTTCAGAGCTACTTAGCACAAAGCTTAGAAAGTACTGCAAAGACCCTTCTCCATCCCTTACTTGTCTGAGGCTAGATGCTGACAATTCTCACATTGGGGTGTGGCAAAAAGGTGCAGGACCTCATTCTAACTCTAATTGGGTGATGAGGATAGAGCTTGGGAAGAAACAAACAGAGGGTAAGTCAACAACAGGGTCACCACATAGTACTAGTGATGCTGGAAATATTGGGGTAGTAGAAGAAGAGGATAGAGTTGCTATGCAGATGATTGAAGAGCTACTTAATTGGAACTATCCCTGTGATTCAACTTCAAGTAACTCCCAGCAGGAAGAAAAAAGGAACCTTCCATGTCATATATAA 624 0.4391 MVQARKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPNSKNQAEDATPNNCGGDDTFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSNSNWVMRIELGKKQTEGKSTTGSPHSTSDAGNIGVVEEEDRVAMQMIEELLNWNYPCDSTSSNSQQEEKRNLPCHI. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00972 207 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Seca4g00972 207 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Seca4g00972 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 155 - -
Seca4g00972 207 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Seca4g00972 207 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00972 Seca-Chr4 15689039 15690453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00972 1 187 AP2-EREBP Transcription Factor Family AT5G25390 60.209 5.07e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g00972 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00972 - - lang:109326202 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00972 4 15689039 15690453 Seca4g00972 4 15689039 15690453 ECH
Seca12g01117 12 10861704 10863544 Seca4g00972 4 15689039 15690453 ECH