Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00958 ATGGATGAATTTTGTGAAGGTTCATGTGTTAACCTTGATGACGATAATATAGATATTAATGTTACTGGTGATGAATTTGATGTAAACCATAGTGAAGATGAAAATGATTCGGGTGGTCCTAGTGTGGAGGAAGAGTTAGGTAGAATGGATCATAGAGGTAAAAGAATGGAAGATTTGACTCCTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGAGCATGGGGAGATATTTTATAGGGCATATGCAAAACGTCATGGATTTGTTGTTAGAAAGGATGAGATTGATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGCAAGAAAGAGGGTAGTAGGAACAAAAAACATTTGATGAGGGTGGATAGGAAAAAAGAACATAGGCCATTAACGCGTTTGGATTGTCAAGCTAAGATACGAATTCGCTTAGATTATAAGACAGATAAATGGAAAGTGGTTTCTTTTGTGGAGACCCACAATCATGAGCTTACCCCTTCTACTTTTGTGCACTTACTACCTAGTAATAGAGGGTTGAATAATGTTGATAAAGCCCAAGATGAAGGAAACATATCATTAGATGAAGTCAATGTTGATGGCATGGAGCCAAGTGACCAAACTCAAAGACTAAACAATAATGAAGTGAACGTGAAAATTAGTGGTAGACACAAAGAGAAGGAGAAGGATTGCACCCAAAATGTGGAAGTGAAAGTGTGTGGTACTCAAGAAGGGCAGAAAAAACAATTCTCACAAGATGTGGAAGTGAAAGTTAGTGGTACTCATGAAGGGAAGGAGAAGGGATGCACCCAACAAGTGGAAGTGAAAGTCAGTGGTAGTCATGATGGGAAGGCAAGGGAATGCACACAAAATGTTAGTTTGAATCATAATGTGGGTAATAAAGGGAAGGAAAAGGAGGTTCATGTCTTGCCACAAAATTCAGTCCAAAACTCTCTAAGTCCAAATAGGAGGTTAAATGATAAAATTTGTCCTATTGCTCCTTCTTTTATGCGCCCCTTTCACAACTATATATTTTGTCCTGGTATGCCAAGCCAAATGATGCATATGCCCCATCCTCAGTACGGTTATGTTCCTATGTACCCAACCGGTTATCCCATGGTTTACCCTAATATGGTTATGCAAAACCCACAGACTGATCACACACACTGGTCTGGAGCTAGCTCGCCTCTTCAGGTTGTAGTTTTAGTATGTGTTCTTTTTTTTACAGCCTAA 1236 0.3916 MDEFCEGSCVNLDDDNIDINVTGDEFDVNHSEDENDSGGPSVEEELGRMDHRGKRMEDLTPVDIRNMEFASEEHGEIFYRAYAKRHGFVVRKDEIDRDIKGNVIMRQFVCKKEGSRNKKHLMRVDRKKEHRPLTRLDCQAKIRIRLDYKTDKWKVVSFVETHNHELTPSTFVHLLPSNRGLNNVDKAQDEGNISLDEVNVDGMEPSDQTQRLNNNEVNVKISGRHKEKEKDCTQNVEVKVCGTQEGQKKQFSQDVEVKVSGTHEGKEKGCTQQVEVKVSGSHDGKARECTQNVSLNHNVGNKGKEKEVHVLPQNSVQNSLSPNRRLNDKICPIAPSFMRPFHNYIFCPGMPSQMMHMPHPQYGYVPMYPTGYPMVYPNMVMQNPQTDHTHWSGASSPLQVVVLVCVLFFTA. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00958 411 MobiDBLite consensus disorder prediction 26 53 - -
Seca4g00958 411 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 245 - -
Seca4g00958 411 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00958 Seca-Chr4 15493908 15497526 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00958 FAR1 8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00958 - - ccaj:109792835 176.022