Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00957 ATGGCCATGGCGATTCAGTGTACTTCATGTGCTCGCTTCCTGGCAGGAGGGCCTTTGCAACGCAAACCTCTTCTCTGCTCCGTCATCCTTTCTACTCGCCCTCGGAATCGGAACGTCAACCTAATTGTCGCCGCCTCTTCCAAAAAGAAAAACAAGAAAAAATTGTCGCAGAGTCATGTTACCGAAGGGGATGAGGAGGAGGACGCATTTGAGTTGCTCTTCAAGCAACTTGAAGAAGATCTCAAAAACGATGATTTGTCAAAAGATGATACCAGTGATGAGATAACTGAAGAAGAAATTGCCCTATTAGAGCGCGAGTTAGCAGATGCATTGGGGGACTATGATACTGAATTGTTAAATTTAGAAGCGAGTGACACAGAAGCCGGTGATGATTCAGAAAATGGCAATGATGATGATGATGATGATGAAGAAGATGAAAGCTCACTGAAGCTTAGAAATTGGCAAATGAAGAAATTGGCTAGAGCTTTAAAAGTTGGCCGCCGCAAAACAAATGTAAGTGTCTTGCTCATTTCTTCTATGGATTTTCAAATAAAAAATCTCGCTGCCGAGCTTTGTCTTGATAGGGCTATTGTACTTGAATTGCTTCGCAACCCCCCTCCAAATCTTCTCATGATGAGTCTATCACTACCTGATGAACCCACAATAACTGTAACATCACTTGAAACTAAACCCAAAGAGATAGTCATTCATAAAGAAACAAATACGGACCGTGCAGAATCTGGACCCAAGGTTCAAGTACCTATTCATGCCATGCAACGCAGTTGGTCTGCTCAAAAGAGATTGAAAAAAGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCGAAACGGCCCACTAATGCAATGATCAGTAGTATCGTGCATGTAACTAACATTCCTCGGAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGCCGTGATCCTTACCAGCGCTCTGTTCCTGAATCTGCTTGA 1002 0.4311 MAMAIQCTSCARFLAGGPLQRKPLLCSVILSTRPRNRNVNLIVAASSKKKNKKKLSQSHVTEGDEEEDAFELLFKQLEEDLKNDDLSKDDTSDEITEEEIALLERELADALGDYDTELLNLEASDTEAGDDSENGNDDDDDDEEDESSLKLRNWQMKKLARALKVGRRKTNVSVLLISSMDFQIKNLAAELCLDRAIVLELLRNPPPNLLMMSLSLPDEPTITVTSLETKPKEIVIHKETNTDRAESGPKVQVPIHAMQRSWSAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDRRDPYQRSVPESA. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00957 333 MobiDBLite consensus disorder prediction 123 150 - -
Seca4g00957 333 ProSiteProfiles 'Homeobox' domain profile. 259 319 IPR001356 GO:0003677
Seca4g00957 333 MobiDBLite consensus disorder prediction 313 333 - -
Seca4g00957 333 Pfam Homeodomain 267 315 IPR001356 GO:0003677
Seca4g00957 333 SUPERFAMILY Homeodomain-like 261 319 IPR009057 -
Seca4g00957 333 Gene3D - 261 321 - -
Seca4g00957 333 MobiDBLite consensus disorder prediction 124 146 - -
Seca4g00957 333 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 45 326 - -
Seca4g00957 333 CDD homeodomain 262 314 IPR001356 GO:0003677
Seca4g00957 333 SMART HOX_1 258 323 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00957 Seca-Chr4 15485829 15489645 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g00957 Homeodomain 5.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00957 - - ccaj:109796293 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00957 4 15485829 15489645 Seca4g00957 4 15485829 15489645 ECH