Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00953 ATGGTGTTATCTTCAATAAGGCAACCTGTCAATACACATCAAAACCGTCTTTGTTCATACTCTTTACTTGATTCTTCAACTCTTATTTACCCAACACCACCTATTGGTTCTCCCAGTGAAAGGTTTGGAAGGTTTCCTGACTTTATAGGAGGTGTCAACCTTAATTCAGACAGAGTGAGTGTAGAACCTTTTCTTTTGTCTGAGGAACCCAACATGGTTCATCAAGAAAACGCAGAACATGTTGAAGGGCCTTTTCAAGAATGCAGAGAGGTTGAATCCAATTTGTTTGCTGATGCTTTTTCCAAGGAACTTCAGAGCTTTGAATTTGAGGAATCTGTTGCATCAAATTCTATTGGAAATGAAGAAGAAAGCCCTCTTATTGATAATCCTTATGGTTTCCTGAGACTGTGTGAAGAACATTTGCTTTTGCCTAAGAAATTTAAGATGGTTGATCAAGACTTCAGAGGGGCACAACCCAATTACTTTGCAGATCTTGTTTTAGAGAAAAAACGCTGTCTTAATTTAATTGGCCAGCTTGCAGAAAACAAGGGGAAGGGTGTTCAAGTGATGGAACATGATTCAACTTCAAGTACATCACAAAATTCTAAAATATTTCCGAAAAGAACACTACCCACCACATATAGAAGATGCTATTGTAGGAAGAGTTGTCGCATCAAAAATTGTGGTTGTTTTAGAACTGGATTCTATTGTACCCAGAATTGTCCTTGCAAAGGAGGCTGCTTCAATGAACCAGATCAAAATGTAGACGGTTTAACACAGGAGAATGTCATTCTGAAGAAACCAGTCAAACCCAAACCACCACGTTGCGCTTGCCAGGTGTCAAAGTGTCAGAAATTACCTTGTTCTTGCTATGTGGCTAAAGTTGGATGCACCCTAAGATGTCAATGCAAGGGATGTGAGAATTGCTATTATTATACAAGAAGCACCAGGCATTGA 957 0.3908 MVLSSIRQPVNTHQNRLCSYSLLDSSTLIYPTPPIGSPSERFGRFPDFIGGVNLNSDRVSVEPFLLSEEPNMVHQENAEHVEGPFQECREVESNLFADAFSKELQSFEFEESVASNSIGNEEESPLIDNPYGFLRLCEEHLLLPKKFKMVDQDFRGAQPNYFADLVLEKKRCLNLIGQLAENKGKGVQVMEHDSTSSTSQNSKIFPKRTLPTTYRRCYCRKSCRIKNCGCFRTGFYCTQNCPCKGGCFNEPDQNVDGLTQENVILKKPVKPKPPRCACQVSKCQKLPCSCYVAKVGCTLRCQCKGCENCYYYTRSTRH. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00953 318 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 275 309 IPR005172 -
Seca4g00953 318 ProSiteProfiles CRC domain profile. 213 311 IPR005172 -
Seca4g00953 318 SMART CXC_2 212 253 IPR033467 -
Seca4g00953 318 SMART CXC_2 271 312 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00953 Seca-Chr4 15408515 15411969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00953 215 310 CPP Transcription Factor Family AT3G22760 33.065 1.24e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca4g00953 TCR 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00953 - K24333 psat:127096180 69.3218