Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00937 ATGGAACAATTCCAGATTGGGGATGTCATTCAACCTTTAGGAGTGTGTGCCCATGAGTTCCACCGCTCTTGCATTCGCGCTTGGTTGGATACCACAAAAACTACTTGTCCTCTTTGTCGCGAGCATGTATCCATCTCTCCATCCATGTAA 150 0.4667 MEQFQIGDVIQPLGVCAHEFHRSCIRAWLDTTKTTCPLCREHVSISPSM. 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00937 49 Pfam RING-H2 zinc finger domain 12 40 IPR024766 GO:0008270
Seca4g00937 49 CDD RING-H2 1 40 - -
Seca4g00937 49 SUPERFAMILY RING/U-box 2 46 - -
Seca4g00937 49 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 45 IPR013083 -
Seca4g00937 49 ProSiteProfiles Zinc finger RING-type profile. 16 40 IPR001841 -
Seca4g00937 49 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 46 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00937 Seca-Chr4 15292715 15292864 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00937 2 40 C3H Transcription Factor Family AT4G00305 43.590 3.15e-08 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00937 - K16281 aprc:113865236 75.8701