Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00928 ATGTTATATATGCTGATCAATCTGGGAGTCACATCCTATATAATTGGAAATTTTACCAATTTAGCAGTTTACGGGACTAGAACTGGTAAACATGTATATCAGAAAGAGATAGTGAAAGCTGCCAGAAGTTTTGCTGCACGCAATAAATTACCTACCCGCTTAAAAAAGCAGATGCTTTCCCATTTAAGTATGAATTACAGAACTGTATTAGAAGGAGTGCAGCAAGAAGAGATTATTCAATCCCTTCCAAAAGCTATTCGAGCTAGTATCTCACGCCATCTACTCCATCCAGCTGTGGAAAGAGTATACTTGTTTCAGGGAGTGTCAAATGGCCTACTCTCTCAACTGGTAGCAGAGTTGAAGGTTGAGTATTTTTCTCCAAGGGAAGATGTGATTTTGCAGAATGAAGAACCAACAGACTTTTATATCTTTGTCAGTGGATCCGCAGAACTTATTGTAGAATATAATGCAATAGAAAGTGTCATTAGTCAGGCAAATTCTGGAGATGTGGTTGGCGAAATAGGAGTTCTATGTTACAAGCCACAGCCGTTTACGGTTCGAACCACAAGCTTGAGTCAAATTATGCGCTTGAGTCGCACTGCCTTTCTAAATCTTGCCCATTCAAACGTTGGAGATGCGACAATAATCATGACCAAATTTCTCCAACATTTGGCAGAATTAAGTACTCAAGATATTGGTGGTGTTTTGCTTCAAATACAGACCATGCTGGCTCTGGATTTGCCCATCACCACATGTTTTGCAGTAAATGCAAATGATGCTGCTTTGTTAAATCGGTTGCTGAAGAAGGGTTCAGATCCAAATGAAGTAGATGACCATGGAAGGACAGCACTGCATATTGCAGCTTCTAATGGCAGTGTGCCTTTTGTGTCTTTGCTTCTAGAACACGGTGCTGATCCAAATAGGAAAGATCGGGAAGGAAATGTGCCACTCTGGGAAGCCATGAGGGGTAGTCATGCACCTGTAGTTGAAATTCTTCGTGCAGCTATGGATGCAGCAGGTTGCAGCCGGTCTAGCAGGGCTGATGGATCGTCTTAA 1056 0.4176 MLYMLINLGVTSYIIGNFTNLAVYGTRTGKHVYQKEIVKAARSFAARNKLPTRLKKQMLSHLSMNYRTVLEGVQQEEIIQSLPKAIRASISRHLLHPAVERVYLFQGVSNGLLSQLVAELKVEYFSPREDVILQNEEPTDFYIFVSGSAELIVEYNAIESVISQANSGDVVGEIGVLCYKPQPFTVRTTSLSQIMRLSRTAFLNLAHSNVGDATIIMTKFLQHLAELSTQDIGGVLLQIQTMLALDLPITTCFAVNANDAALLNRLLKKGSDPNEVDDHGRTALHIAASNGSVPFVSLLLEHGADPNRKDREGNVPLWEAMRGSHAPVVEILRAAMDAAGCSRSSRADGSS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00928 351 Gene3D Helix hairpin bin 29 91 - -
Seca4g00928 351 Pfam Ankyrin repeats (3 copies) 253 333 IPR002110 GO:0005515
Seca4g00928 351 Pfam Cyclic nucleotide-binding domain 124 208 IPR000595 -
Seca4g00928 351 ProSiteProfiles cAMP/cGMP binding motif profile. 104 223 IPR000595 -
Seca4g00928 351 CDD CAP_ED 104 217 IPR000595 -
Seca4g00928 351 Gene3D Jelly Rolls 92 230 IPR014710 -
Seca4g00928 351 ProSiteProfiles Ankyrin repeat profile. 279 311 IPR002110 GO:0005515
Seca4g00928 351 SUPERFAMILY Ankyrin repeat 253 333 IPR036770 -
Seca4g00928 351 SMART ANK_2a 279 308 IPR002110 GO:0005515
Seca4g00928 351 SMART ANK_2a 244 275 IPR002110 GO:0005515
Seca4g00928 351 SMART ANK_2a 312 341 IPR002110 GO:0005515
Seca4g00928 351 SMART cnmp_10 104 221 IPR000595 -
Seca4g00928 351 ProSiteProfiles Ankyrin repeat region circular profile. 279 311 - -
Seca4g00928 351 PANTHER POTASSIUM CHANNEL AKT1 1 338 IPR045319 GO:0005249|GO:0006813
Seca4g00928 351 Gene3D - 245 347 IPR036770 -
Seca4g00928 351 FunFam Potassium channel KAT2 92 228 - -
Seca4g00928 351 SUPERFAMILY cAMP-binding domain-like 31 224 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00928 Seca-Chr4 15212376 15218552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00928 1 332 Ion Channels AT2G26650 55.224 3.54e-129 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00928 K21867 - gmx:100802964 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00928 4 15212376 15218552 Seca4g00928 4 15212376 15218552 ECH
Seca4g00928 4 15212376 15218552 Seca4g00928 4 15212376 15218552 PCT