Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00900 ATGGAAAGTGATGAACTGAGAGTGGCTAGTGCACGCATTGGCAGCTCCAGCATCTGGAGAAGTGGTGCTGTTGATGTGTTTTCAGGTTCTTCACGCAGAGATGATGATGAACAAGAGCTTAAGTGGGCTGCAATTGAGAAACTTCCCACTTATCTACGCATGACAAGGGGTATACTCACTGAGGCAGAAGGTCAACTTACAGAGATTGATATTAACAAACTTGGACCCTTACAGAGGAAGAATTTGGTGGAGAGGCTTGTCAAGATTGCAGAGGAAGATAATGAAAAGTTCTTGTTGAAGTTAAGAAAACGCATTGATAGAGTTGGACTTGATATTCCCACAATTGAAGTCCGTTTTGAGCACTTGAATGTTGAAGCTGAAGCTCATGTAGGAAGAAGAGCATTGCCTACAATCTTTAACTTCTCCATTAATTTGTTTGAGGGGTTCCTTAATAATCTTCACCTTATTCCCACTAGAAAGAAGCCATTCACAGTTCTTCATGATGTTAGTGGAATCATCAAGCCTAAAAGAATGACACTGCTCTTAGGCCCTCCAAGTTCAGGAAAGACCACATTATTGTTGGCACTGGCTGGAAGACTTGGTAAAGATCTAAAATTTTCAGGGAGAGTTGCATATAATGGTCATGGAATGGAGGCATTTGTACCTCAGAGAACATCAGCTTACATAAGTCAAACTGATGTGCACATAGGAGAAATGACAGTACGAGAAACATTGGCCTTTTCAGCAAGGTGTCAAGGGATAGGAACACGTTATGAGATGCTGGAAGAATTATCAAGAAGGGAGAAGGCTGCAAACATTAAGCCAGATCCTGATCTTGATATTTATATGAAGGCAGCAGCACTAGAAGGCCAAGAGACCAATGTTGTTACTGATTATATAATTAAGATTTTGGGACTAGATGTTTGTGCTGATACCTTGGTAGGGGATGACATGATCCGGGGTATTTCTGGTGGACAAAAGAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCACTTTTCATGGATGAAATATCAACTGGTTTGGACAGTTCTACCACATTCCAAATGATTAATTCACTAAGACAATCTATCCACATTCTGAATGGAACAGCTGTCATCTCTCTTCTCCAGCCAGCACCAGAAACTTATGAGTTATTTGATGATATAATTCTTCTCTCAGATGGACAAATTGTCTATCAAGGTCCAAGGGAAAATGTTCTTGAGTTCTTTGAATACATGGGTTTCAAATGTCCTGAGAGGAAAGGAGTAGCAGACTTTTTACAAGAAGTAACATCAAGAAAGGATCAAGAACAGTACTGGGCAAACAAAGATGAACCATATACCTTTATCACTGTTAAACAATTTGCTGAAGCTTTTCAGTCATTTCACATTGGTAGAAAACTTGGTGATGAACTTGCTACTCCATTTGACACCTCCAAAGGCCACCCTGCTGCTTTAACAAAAAACAAGTATGGTGTGAGCAAGAAGGAACTTCTAAAAGCATGTGTATCAAGAGAATTCCTACTTATGAAAAGGAATTCCTTTGTCTATATTTTCAAGATGTGGCAGTTGATTTTCACTGGCTTAGTAACAATGACATTGTTCCTACGAACTGAGATGCACCGGGATACAGAAACTGATGGTGGGATCTACATGGGTGCCTTGTTCTTCATACTAATTGTAATTATGTTCAATGGATATGCTGAGTTATCCATGTTCATCATGAAACTTCCTGTTTTCTATAAGCAAAGGGAGCTTCTCTTTTTTCCTGCTTGGGCATACTCTTTGCCTACATGGATCCTTAAGATTCCTATCACCTTAGTAGAAGTTGGTATTTGGGTTGTGATGACTTACTATGTCATAGGATTTGATCCAAGTTTTGAAAGGTTCATCAAACAGTACTTTCTGCTAGTTTGTATCAACCAAATGGCATCTGGACTTTTTCGATTCATGGGGGCAGTTGGGAGGAACATTATTGTTGCAAACACAGTTGGATCATTTGCTTTACTTGCAGTTTTGGTCATGGGTGGATTTATCCTATCTAGAGTTGATGTGAAGAAGTGGTGGTTGTGGGGTTACTGGGTCTCCCCCATGATGTATGGACAGAATGCTATAGCTGTCAATGAATTCCTTGGAAAGAGTTGGTCACATATTCCACCTGGTTCAACAGAACCATTAGGAGTACAGGTCTTGAAGGCACGTGGGATTTTCCCTGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTATTCAACTTCCTTTTCCCATTGGCCTTACATTATCTTGACCGTAAGTACAACTTTCCTACACATGTGCTTTCAATCTTTGGTAAACCCCAAGCCTTAATATCAGAAGAAGCCTTAGCTGAGAGAAATGCTAGCACAAATGGACATATCATTGAACTGTCTCCTATATTTGATGGTTCTTCTGGGAATGAAAGTAGAAGGAGTTTGTCTTCCAGAACGCCATCAGCAAGAGTTGGCAGCATTGTTGCAGCTGATAACACCAGGAAGCGAGGGATGATTCTTCCTTTCACACCCCTTTCTATCACTTTTGATGAAATCAGATATGTAGTGGACATGCCACAGGAAATGAAGGCTCAAGGCATTCTTGAAGATCAACTTGAACTCTTGAAGGGTGTTAATGGAGCTTTTAGACCAGGAGTTCTAACAGCTCTAATGGGTATAAGTGGAGCTGGTAAAACAACTCTAATGGATGTGTTGTCTGGAAGGAAAACAACAGGATATATTCAAGGACAAATCACTATATCAGGGTACCCTAAAAAGCAAGAAACATTTGCTCGCATATCAGGATACTGTGAGCAGACTGATATCCACTCTCCCCATGTTACAGTCTATGAGTCTCTAGTTTATTCTGCATGGCTCAGGTTACCCTCTGAGGTTGATTCTGCCACAAGAAAGATGTTCATTGAGGAAGTTATGGAGCTTGTAGAGCTGACTCCATTAAGAGAAGCCCTTGTTGGATTGCCTGGAGTGAATGGTCTGTCCACTGAGCAGAGAAAGAGATTGACAATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCTATAGTAATGAGAACAGTGAGGAATACAGTGGATACAGGGAGAACTGTGGTCTGCACAATTCACCAGCCTAGCATTGATATATTTGATGCTTTTGATGAGCTACTTCTCTTGAAGCGTGGAGGTGAGGAAATATATGTGGGGCCTTTAGGCAGGCATTGTTCTCATTTGATCAATTACTTTGAGGGAATTAATGGAGTGCCAAAAATTAAGAATGGTTATAATCCTGCCACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGCAGCTCTTGGAGTTAACTTTGCTGAAATATACAAGAATTCCGACCTATATAGGAGGAACAAGGCCTTGATCAGGGAACTTAGTACACCACCAGCACGTTCTAAAGACTTATACTTCACAACACAGTACTCTCAGTCTTTCATAACTCAATGCATGGCTTGCCTTTGGAAACAGCGCCTATCATACTGGAGAAATCCCCCATATAGTGCAGTGAGACTTTTGTTCACAACAGTCATAGCTGTGTTGTTTGGGACAATATTTTGGGATCTTGGCTCCAAATGGCAAAGAAAACAAGATCTATTTAATGCTATGGGATCCATGTATGCTGCAGTCCTCTTCATTGGGGTGCAAAATGCTACATCTGTGCAACCAGTTGTAGCCATTGAGAGAACAGTCTTCTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTGCCATATGCATTTGGACAGGTTGCTGTTGAGATTCCATACATATTCATTCAAACCCTTGTATATGGGGTTATAGTGTATGCCATGATTGGCTTTGATTGGACAGGAAGCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTCACATTTTTATACTTCACCTTATTTGGAATGATGCTTGTGGGTGCTACCCCGGATCACAGTGTTGCTGCTATAGTTTCCTTTGGGTTCTACTTGATATGGAACCTTTTCTCAGGATTTGTGATTCCCAGAACTAGGATGCCGGTATGGTGGAGATGGTTCTTCTGGATTTGTCCTGTCTCTTGGACATTATATGGATTGGTTACTTCACAATTTGGTGATATAAAGGAACGTATGGAGAGTGGAGAGATTGTGGAAGAGTTTGTTAGGAGTTATTTTGGGTATAGAGATGATTTCAAAGCCATAGCTGCAGTTGTGGTCGTTGCCTTTTCACTAATCTTTGGATTTACCTTTGCCTTTTCAATTAAGGCATTCAATTTCCAAAAGAGATGA 4374 0.4083 MESDELRVASARIGSSSIWRSGAVDVFSGSSRRDDDEQELKWAAIEKLPTYLRMTRGILTEAEGQLTEIDINKLGPLQRKNLVERLVKIAEEDNEKFLLKLRKRIDRVGLDIPTIEVRFEHLNVEAEAHVGRRALPTIFNFSINLFEGFLNNLHLIPTRKKPFTVLHDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLGKDLKFSGRVAYNGHGMEAFVPQRTSAYISQTDVHIGEMTVRETLAFSARCQGIGTRYEMLEELSRREKAANIKPDPDLDIYMKAAALEGQETNVVTDYIIKILGLDVCADTLVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTFQMINSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYTFITVKQFAEAFQSFHIGRKLGDELATPFDTSKGHPAALTKNKYGVSKKELLKACVSREFLLMKRNSFVYIFKMWQLIFTGLVTMTLFLRTEMHRDTETDGGIYMGALFFILIVIMFNGYAELSMFIMKLPVFYKQRELLFFPAWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSFERFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVLVMGGFILSRVDVKKWWLWGYWVSPMMYGQNAIAVNEFLGKSWSHIPPGSTEPLGVQVLKARGIFPEAYWYWIGVGASIGYMLLFNFLFPLALHYLDRKYNFPTHVLSIFGKPQALISEEALAERNASTNGHIIELSPIFDGSSGNESRRSLSSRTPSARVGSIVAADNTRKRGMILPFTPLSITFDEIRYVVDMPQEMKAQGILEDQLELLKGVNGAFRPGVLTALMGISGAGKTTLMDVLSGRKTTGYIQGQITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPSEVDSATRKMFIEEVMELVELTPLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGRHCSHLINYFEGINGVPKIKNGYNPATWMLEVTSEAQEAALGVNFAEIYKNSDLYRRNKALIRELSTPPARSKDLYFTTQYSQSFITQCMACLWKQRLSYWRNPPYSAVRLLFTTVIAVLFGTIFWDLGSKWQRKQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAVEIPYIFIQTLVYGVIVYAMIGFDWTGSKFFWYLFFMFFTFLYFTLFGMMLVGATPDHSVAAIVSFGFYLIWNLFSGFVIPRTRMPVWWRWFFWICPVSWTLYGLVTSQFGDIKERMESGEIVEEFVRSYFGYRDDFKAIAAVVVVAFSLIFGFTFAFSIKAFNFQKR. 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00900 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
Seca4g00900 1457 SMART AAA_5 897 1089 IPR003593 GO:0016887
Seca4g00900 1457 SMART AAA_5 175 407 IPR003593 GO:0016887
Seca4g00900 1457 Pfam ABC-2 type transporter 1185 1399 IPR013525 GO:0016020|GO:0140359
Seca4g00900 1457 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
Seca4g00900 1457 Pfam Plant PDR ABC transporter associated 719 773 IPR013581 -
Seca4g00900 1457 CDD ABCG_PDR_domain2 857 1095 IPR034003 -
Seca4g00900 1457 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 6 1457 - -
Seca4g00900 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1097 IPR027417 -
Seca4g00900 1457 Pfam ABC transporter 166 348 IPR003439 GO:0005524
Seca4g00900 1457 Pfam ABC transporter 888 1040 IPR003439 GO:0005524
Seca4g00900 1457 Gene3D - 150 462 IPR027417 -
Seca4g00900 1457 Gene3D - 878 1102 IPR027417 -
Seca4g00900 1457 FunFam ABC transporter G family member 40 874 1104 - -
Seca4g00900 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 860 1112 IPR003439 GO:0005524
Seca4g00900 1457 FunFam ABC transporter G family member 34 153 457 - -
Seca4g00900 1457 Pfam ABC-2 type transporter 381 434 IPR043926 GO:0140359
Seca4g00900 1457 Pfam ABC-transporter N-terminal 90 141 IPR029481 -
Seca4g00900 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 423 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00900 Seca-Chr4 14915461 14922997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00900 896 1111 Calmodulin-binding Proteins AT2G36910 26.457 6.06e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00900 K08711 - gmx:100804030 2625.51