Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00896 ATGTTGGATGTTTACATCCATGATTACCTAGTAAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGGAATCTATAATTTTACTAAGAGTTTCTAAGACACAATTAATTAAGGCAAGGGAGCAACAGCAACAGCAACAGCAACAGCAACAACAACAACAGCAGCAGCAGCAGCAGCCTCAACCCCAGCAGTCACAGCATCAACAACAGCAGCAGCAACAAATGCAGATGCAACAGCTCCTGTTGCAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAGCAACAGCCACAACCGCAGCAACAACAGCCACAGCCTCAACAACAACAAAATAGGGATAGGGCTCATCTTTTAAATGGTAGCGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCCACAAAGATGTATGAGGAGAGGTTAAAACTTCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTTTTGGACCCTAATCATGCCTCAATATTGAAGTCAGCTGCAGCTACCGGCCAGCCATCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGCACTCAGCAAATTCCAGGGTCTACAATGGATATAAAGAGTGAGATAAATCCCGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGCAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACCCTGAAAGGGTGGCCGCTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTCCAGCAGCAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCAACAACTTCAAATGTTGACACCGCAGCATCAACAACAGCTTATGCTTGCACAACAAAATTTGGCATCACCATCTGCTAATGAAGAAAGTCGAAGACTAAGAATGCTTTTGAATAATAGGAGTTTGGGCCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCGAATGTTGGATCACCTCTTCAAGGAGGCGGCCCTCCTTTTCCTCGTGGAGATACTGATATGCTGATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACATCAACAACAGCCAAGCACCAATGCACAGCTGCAGCAACTTCAACAGCATACTCTTTCGAATCAACAATCTCAGACTTCAATTCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGCGTCAACATGGATGGTAGTATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAACCTGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACGACAGGCCCATCGCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGACGTGATATCAATGCCTGCCTTGCCTCATAGTGGTACTTCTTCAAAGCCTCTAATGATGTTTGGCTCTGACGGCACCGGAACTCTTACGTCATCTTCAAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCCAGAGATACTGTTGGGCGTTGTATGGATGTAAGCAAAGGCTTCACATTTGCTGATGTAAACTCTGTACGGGCAAGCACAAGCAAAATTGCCTGTTGCCATTTCTCCTCTGATGGAAAATTACTTGCTAGTGGTGGGCATGACAAAAAGGTTGTTCTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATCACTGATGTCCGTTTCAGTCCAAGCATGCCACGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCACTTCGCACCTTTACGGGACATTCTACATCCGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGCGACGGTGATGGCGAGATACGGTATTGGAGCATAAACAATGGCAACTGTGCTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAGCCTCGTCTAGGGAGATATCTTGCTGCAGCTGCAGAGAACATTGTGTCTATACTTGATGTGGAGACGCAGGCATGCCGGTATTCATTAAAGGGGCACACAAAGACAATAGATTCTGTATGCTGGGATCCATCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGAATCTTGGAACAGGGAATGAAGGAGAATGTATTCATGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCGTGTGTTTTCCACCCAACATACCCTTCATTGCTGGTCATTGGCTGCTACCAGTCAATGGAGCTCTGGAACATGGCTGAGAACAAGACAATGACACTGTCTGCTCATGAAGGTCTAATTACTGCATTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCAAGTCATGACAAGTTTATCAAGCTGTGGAAGTGA 2703 0.4536 MLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEESIILLRVSKTQLIKAREQQQQQQQQQQQQQQQQQQPQPQQSQHQQQQQQQMQMQQLLLQRHAQQQQQQQQQQQQQQQQQQPQPQQQQPQPQQQQNRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDEAAMKQRFGENMGQLLDPNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARTQQIPGSTMDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFQQLQMLTPQHQQQLMLAQQNLASPSANEESRRLRMLLNNRSLGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQQHQQQPSTNAQLQQLQQHTLSNQQSQTSIHSMHQQDKVGGGGGSVNMDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGTSSKPLMMFGSDGTGTLTSSSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFADVNSVRASTSKIACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGNCARVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRVWNLGTGNEGECIHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHEGLITALAVSTVNGLVASASHDKFIKLWK. 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 900 - -
Seca4g00896 900 MobiDBLite consensus disorder prediction 145 168 - -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 783 815 - -
Seca4g00896 900 Coils Coil 124 151 - -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Seca4g00896 900 MobiDBLite consensus disorder prediction 471 531 - -
Seca4g00896 900 FunFam Transcriptional corepressor LEUNIG 747 900 - -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 900 IPR001680 GO:0005515
Seca4g00896 900 MobiDBLite consensus disorder prediction 539 563 - -
Seca4g00896 900 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Seca4g00896 900 Pfam WD domain, G-beta repeat 619 647 IPR001680 GO:0005515
Seca4g00896 900 Pfam WD domain, G-beta repeat 779 814 IPR001680 GO:0005515
Seca4g00896 900 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Seca4g00896 900 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Seca4g00896 900 FunFam Transcriptional corepressor LEUNIG 595 746 - -
Seca4g00896 900 SMART WD40_4 609 648 IPR001680 GO:0005515
Seca4g00896 900 SMART WD40_4 861 900 IPR001680 GO:0005515
Seca4g00896 900 SMART WD40_4 694 734 IPR001680 GO:0005515
Seca4g00896 900 SMART WD40_4 776 814 IPR001680 GO:0005515
Seca4g00896 900 SMART WD40_4 651 690 IPR001680 GO:0005515
Seca4g00896 900 SMART WD40_4 820 859 IPR001680 GO:0005515
Seca4g00896 900 SUPERFAMILY WD40 repeat-like 614 900 IPR036322 GO:0005515
Seca4g00896 900 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 900 - -
Seca4g00896 900 Gene3D - 595 742 IPR015943 GO:0005515
Seca4g00896 900 Gene3D - 743 900 IPR015943 GO:0005515
Seca4g00896 900 ProSiteProfiles LIS1 homology (LisH) motif profile. 1 30 IPR006594 GO:0005515
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 647 - -
Seca4g00896 900 Pfam LisH 1 26 IPR006594 GO:0005515
Seca4g00896 900 CDD WD40 616 900 - -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Seca4g00896 900 MobiDBLite consensus disorder prediction 421 563 - -
Seca4g00896 900 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Seca4g00896 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Seca4g00896 900 Coils Coil 80 106 - -
Seca4g00896 900 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Seca4g00896 900 PRINTS G protein beta WD-40 repeat signature 887 900 IPR020472 -
Seca4g00896 900 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Seca4g00896 900 MobiDBLite consensus disorder prediction 421 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00896 Seca-Chr4 14845042 14855230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00896 695 899 Miscellaneous Gene Families AT5G08390 25.238 3.94e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca4g00896 WD40 0.0052 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00896 - - gmx:100816263 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00896 4 14845042 14855230 Seca4g00896 4 14845042 14855230 ECH
Seca4g00896 4 14845042 14855230 Seca4g00896 4 14845042 14855230 PCT