Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00883 ATGGCTCTGCTGAGAATGTCTCAGCCTCACCATAATAACATCAACAATGACAACAACAACAACAACAATTTGGTCAAACCGGTTCTCCATGATTTTCTGGGCATGAAGCCCACTGATACTCCCACCGATGTGAGGTTATCGGAGCCGTCGGCATCGGTGTCTTCCGTCGGTGTACGTGGCCCCTTCTCCTCCACTTCTGATACTCTTTCTGAAAAACAGGTTGGAAATCATGTTGAGGGTGTTCCATTTTATGGCCCAAGGAGTGATTTTTCTGGCACTGAGATAAGTAACAGACTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCTAGAGATGCCTTCCAGTTGGTCCCTGACTCCTTTCAAAACTCACATTTGATGAAGGTGCTCAGGAATGCAGCTGGTGCAGAGAGGTCTAGAAGGCCCAATGATGATGAAGTGTTACTTGGTAGTATGCAGTCACTGAAGCCATCTTCTGCTTCTCAGATATTTCAGCCTCCAACCAGCACTAAGATTGATGCCAATAAATGGGAACGACCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATACACCGCGTGGAGGGCAATTGGCACCTTTTGTACACCAAATGTCTTCAAACAAGATTAGGGATACCAATGCTGGTCCATCATATATCTCTCAGTCAGCTGCTGATGAAGGATCAAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACACAACTGCTATTGCCACTGATAAAACTTCATCTGCAGTGCTTCTTGGTGGAAGCAGGCCAAAGCCTATAACTAATATAGTAGAATCATCCACACCTCCAAGCAGTCAACATGGGTTAACATCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCAGATGTGATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCCACAGCATTCTCACCAAAATCTACTGTAAAGCTGGTTAATGATAGTAACTTGCACAGTGGAGAAAATGAAACAGGTGTAGTGAGTAATATGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCACGCCATCGGGCCTGGTGATCGAGTATCTACTCCAGCAGGGGTACACCAAGGAAGCATTTTTGCTAAAGACACAAGAAATGCAGTTCAAGTAGCAGATCCCAGTTCTGAAGACAAAAGAGCACAGTGA 1254 0.449 MALLRMSQPHHNNINNDNNNNNNLVKPVLHDFLGMKPTDTPTDVRLSEPSASVSSVGVRGPFSSTSDTLSEKQVGNHVEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDAFQLVPDSFQNSHLMKVLRNAAGAERSRRPNDDEVLLGSMQSLKPSSASQIFQPPTSTKIDANKWERPILMNVGPSMQHTPRGGQLAPFVHQMSSNKIRDTNAGPSYISQSAADEGSRTGIKGPGILSSINTTAIATDKTSSAVLLGGSRPKPITNIVESSTPPSSQHGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSTVKLVNDSNLHSGENETGVVSNMAFPQELHGKLSITGSSSHAIGPGDRVSTPAGVHQGSIFAKDTRNAVQVADPSSEDKRAQ. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00883 417 Pfam tify domain 289 321 IPR010399 -
Seca4g00883 417 MobiDBLite consensus disorder prediction 374 417 - -
Seca4g00883 417 MobiDBLite consensus disorder prediction 43 73 - -
Seca4g00883 417 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g00883 417 MobiDBLite consensus disorder prediction 42 80 - -
Seca4g00883 417 MobiDBLite consensus disorder prediction 8 22 - -
Seca4g00883 417 ProSiteProfiles Tify domain profile. 287 322 IPR010399 -
Seca4g00883 417 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 90 348 IPR040390 -
Seca4g00883 417 SMART tify_2 287 322 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00883 Seca-Chr4 14562648 14567525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00883 26 320 Tify Gene Family AT4G32570 38.730 3.63e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca4g00883 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00883 - - gmx:100807222 661.373