Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00882 ATGAAAAAAGTAAATACATTTTGTGCCAAAGAAGAAGAGCGTCCACTTCGGATCACTAGAGCAAGGGCTAGAGCCTTGGGAGGGATTCCACCCTATTCAAGACCGTCCTTCAACAATGACCAGAAAAACTTGATTAGACCCAAAAGAGCAGCTTCTGAGAACAAATCTTCTTTGGTTGTTCCTGATGATGCTCTTCAGCATCATAAGAGAAGGGCAGTTCTTACAGATGTTACTAATATCTGCACAAAACCACATGATAAATGTATTAAAGCATCACAATTTCAGGCAAGAGGAGTTTACAAAAAGAAAGACACAAAGTTAGCTTCAGATGTCTCCATTGAAGTTTCATCATCACAACAGGATGTAAGAGCAAAGTTAACAGAAGAACTATCCACAATAAGGATGGTAGAGTCAAATGACACCATTGCTGCAGCAACTTTGCCTAACAAAGAGCCAGCAGAACATTGTATGTCCAACAGCATAAGAGAACATGTCATAGAAGATACCGCACGTTCAACACAAGAATCTGTGCAATTTGATGAACTCTTGATCTCTCCAAACAAAGATATAGATGTGATTTGTGAGAAGCTAGGAGCCTCAGATTGCCTGGCTATTGTGGACATAGATTCAGAGTTAAAGGATTCTCAAATTTGGAGTTCTTATGCCCCTGATATATACAACAAAAATCGAGTCACAGAGATTGAAAGGAAACCATTAACCAACTATATGGATAAGTTGCAGCAAGATATCACTCCAAACATGCGCGGAATTCTGATAGATTGGCTGGTGGAGGTTTCTGAGGAATATAATTTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGGTTCAGAAACAAAGGCTCCAGTTGGTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAGGAATTTTGCTTCATCACAGATAACACATACACAAAAAAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACCTCTTGCATTTTCAGTTATCTGTTCCCACAGCTAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCATCATACAAGGTTCCTCGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAGTACAGCTTCTTGCAGTTTCTACCTTCCCTAGTGGCTGCTTCTGCAGTGTTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCCTGGAATCCAACTCTGGAGCATTATACAAACTACAAAGCTTCACAGCTCAAAACTGTTGTTCTTGCCCTGGAAGATCTACAACTTAATACCAAAGGCTGTTCCCTGAATGCTATACGTGAGAAATATAAACAACAGAAGTTCAATTGTGTGGCAAAACTGTCTCCAAAACCGGTGAAGTCACTCTTCCAGGTTCAAGTGTAA 1461 0.4045 MKKVNTFCAKEEERPLRITRARARALGGIPPYSRPSFNNDQKNLIRPKRAASENKSSLVVPDDALQHHKRRAVLTDVTNICTKPHDKCIKASQFQARGVYKKKDTKLASDVSIEVSSSQQDVRAKLTEELSTIRMVESNDTIAAATLPNKEPAEHCMSNSIREHVIEDTARSTQESVQFDELLISPNKDIDVICEKLGASDCLAIVDIDSELKDSQIWSSYAPDIYNKNRVTEIERKPLTNYMDKLQQDITPNMRGILIDWLVEVSEEYNLVPDTLYLTVNLIDRFLSTSLVQKQRLQLVGVTCMLIASKYEEICAPRVEEFCFITDNTYTKKEVLKMESEVLNLLHFQLSVPTAKTFLRRFIQAAQSSYKVPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWNPTLEHYTNYKASQLKTVVLALEDLQLNTKGCSLNAIREKYKQQKFNCVAKLSPKPVKSLFQVQV. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00882 486 FunFam Mitotic cyclin 6 238 338 - -
Seca4g00882 486 ProSitePatterns Cyclins signature. 255 286 IPR006671 -
Seca4g00882 486 CDD CYCLIN_AtCycA-like_rpt2 353 467 - -
Seca4g00882 486 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 429 486 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g00882 486 PIRSF Cyclin_A_B_D_E 33 485 IPR046965 GO:0016538|GO:0044772
Seca4g00882 486 PANTHER CYCLINS 174 468 IPR039361 -
Seca4g00882 486 Pfam Cyclin, N-terminal domain 224 351 IPR006671 -
Seca4g00882 486 SUPERFAMILY Cyclin-like 352 475 IPR036915 -
Seca4g00882 486 SUPERFAMILY Cyclin-like 214 350 IPR036915 -
Seca4g00882 486 Gene3D - 238 351 - -
Seca4g00882 486 CDD CYCLIN_AtCycA_like_rpt1 214 349 - -
Seca4g00882 486 SMART Cyclin_C_2 353 476 IPR004367 -
Seca4g00882 486 SMART cyclin_7 260 344 IPR013763 -
Seca4g00882 486 SMART cyclin_7 357 445 IPR013763 -
Seca4g00882 486 FunFam Cyclin A1 340 472 - -
Seca4g00882 486 Pfam Cyclin, C-terminal domain 353 475 IPR004367 -
Seca4g00882 486 Gene3D - 224 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00882 Seca-Chr4 14534342 14538964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00882 2 482 Core Cell Cycle Gene Families AT5G25380 52.041 1.59e-154 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00882 K06627 - gmx:547780 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00882 4 14534342 14538964 Seca4g00882 4 14534342 14538964 ECH
Seca4g00882 4 14534342 14538964 Seca4g00882 4 14534342 14538964 PCT