Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00879 ATGGACCTTGTTTTATCTCAACATCAACTATATCTTGATTCTGAAGAAGAAGAAGAAGATACTTACCCTTTGTTAATGGCTCGCCCCACTCATCATGTCATTGACATAACGCCTAGTTCTGAACCTTCCACTTCTACCTCTCCTAATGTTAATAATAATAGATTGCCGGTTTCTCAGCCTTCAAATGGGTCAAATTCTTCTTCTAGGATGAGACGAGGGAATTCATCACGTGGGCAAAGGAGTTCATTGAATTCAGGGGTATGGATATCTATTGAGCTTCTCCTTACAGTTAGTCAGATTGTTGCTTCTGTGGTTGTTTTGTCTGTATCAAGGCATGAGCATCCGCGTACACCATTGTTTGCATGGATTGTTGGTTATGCATCTGGATGTGTTGCTTCCCTCCCTTTACTCTATTGGCGATATTATCATAATAACCGTGCACGAGACCAGGATTCATCTCAAACCTCTCCTCGAATTGATGATCCTTCAGGGATACTTCTTAACAGTTCCATGACAAATGGAGGAGGAGGAGATGTTCATTCTGCTGCTGCTGCTGCTGCTGTGTCATCATCCTCTAGAAGCCATCAAGCTTCATGGTTGATGAATGCAAGACTGAAACTACTTGTGGAATACTTCAAAATTGCCGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTAATGAAGCTCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGTTGTATCGGTTATGCTATGCCCTTCATTCTATGCGCAACAATCTGCTGCTGTCTGCCTTGTATAATTTCCGTCCTTGGGATTAGAGAGGATCCAATACAAACTCAAGGTGCAACCTCTGAAACCATTAATGCTCTACCAACTTACAAGTTCAAAATGAAGAAAAATAAAAGCAAGGATGAAAGCAACTCAGCTGTCAGTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTAGCGAAATATGAAAATAACGATGAGCTGAGGGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTGGACAAGTGGTTGAAGATAAATGCCTTATGCCCTCTTTGCAAGAGTGAGATTGGTGAGAACGTAACAGGATCAGTCTCTGGGGAGGATGTGAACCAACAACAGGGTGAGAACAGGGTTGAGAATGGCCTCTCCAATACCTCATCGTAA 1257 0.4193 MDLVLSQHQLYLDSEEEEEDTYPLLMARPTHHVIDITPSSEPSTSTSPNVNNNRLPVSQPSNGSNSSSRMRRGNSSRGQRSSLNSGVWISIELLLTVSQIVASVVVLSVSRHEHPRTPLFAWIVGYASGCVASLPLLYWRYYHNNRARDQDSSQTSPRIDDPSGILLNSSMTNGGGGDVHSAAAAAAVSSSSRSHQASWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSANEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDPIQTQGATSETINALPTYKFKMKKNKSKDESNSAVSEGGIVAAGTEKERMISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEIGENVTGSVSGEDVNQQQGENRVENGLSNTSS. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00879 418 MobiDBLite consensus disorder prediction 35 82 - -
Seca4g00879 418 Pfam Ring finger domain 343 384 IPR001841 -
Seca4g00879 418 SMART ring_2 343 383 IPR001841 -
Seca4g00879 418 MobiDBLite consensus disorder prediction 394 418 - -
Seca4g00879 418 FunFam E3 ubiquitin-protein ligase 326 392 - -
Seca4g00879 418 MobiDBLite consensus disorder prediction 36 82 - -
Seca4g00879 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 392 IPR013083 -
Seca4g00879 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 30 387 - -
Seca4g00879 418 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Seca4g00879 418 SUPERFAMILY RING/U-box 335 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00879 Seca-Chr4 14504935 14508061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00879 58 394 C3H Transcription Factor Family AT1G80400 56.140 3.18e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00879 - - gmx:100795904 597.816