Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00875 ATGGCCTCTAAAACTGAAAGCGAGAATTCAACCGAAACTACTCCATCATCGCCAAAGAATATATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAATTTGTGCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAATCGATATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTAGCAATAAGGTGAATAGCAGCATCTTTTTTACCCTGCTACAAAATCTTTAG 366 0.377 MASKTESENSTETTPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPSNKVNSSIFFTLLQNL. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00875 121 FunFam Mediator of RNA polymerase II transcription subunit 31 18 115 - -
Seca4g00875 121 Pfam SOH1 30 106 IPR008831 GO:0003712|GO:0006355|GO:0016592
Seca4g00875 121 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g00875 121 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 115 IPR038089 -
Seca4g00875 121 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 111 IPR008831 GO:0003712|GO:0006355|GO:0016592
Seca4g00875 121 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00875 Seca-Chr4 14470141 14473221 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Seca4g00875 Med31 6.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00875 K15153 - gmx:100818057 213.386