Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g00872 | ATGGGTGTGGATTACTATAATATATTGAAGGTGGATAGAAATGCTACCGAGGATGATTTGAAGAAAGCATACAGAAAATTGGCCATGAAATGGCACCCTGATAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAGCAGATCTCTGAGGCCTATGATGTAAGAAATCAATCCCATCATTCTTTTCTTTCTGTATTGAGTGATCCTCAGAAAAGGGCAATTTATGATCAACATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGATAGTGAACCATCAGGTGGGTTTAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGACCAGGCAAGTCCAAGAGATTTTCCTCTGATGGAGGGGGAGCTTTTAATGGATTTGGTGGAAATGAAAATATTTTTAGAACATATAGTGAACGTGGGAATATGCTAAAGAAGCCACCACCTGTTGAGACCAAATTGCCTTGCAGTTTGGAGGAGTTATATTCTGGATCTACAAGGAAAATGAAAATCTCAAGGACTGTAATAGATGCCAATGGAAGGCCAAGTCCAGAAACAGAGATATTAACCATTGAAGTGAAGCCAGGTTGGAAGAAAGGGACCAAGATAACATTCCCAGATAAAGGGAATCAGCAACCAAATCAACAGGCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTGTTCAAAAGAGATAGCAATGACCTCATTGTGAGCCAAAGGGTGTCACTAGCAGAGGCTATTGGAGGAACTTCAATAAATCTCAAAACACTTGATAACCGTAGTTTATGTATCCCAGTGACTGATATTGTGAGTCCTGGTTATGAGCTGGTTGTTGCAAATGAAGGGATGCCAATAACAAAAGAGCCTGGTCATAGGGGTGACTTGAGGATCATATTTGAGGTTAAGTTCCCTACAAAATTGACTTCAGAGCAAAGAGCAGGACTAAAGCGAGCATTGGGAGGAGGAGGAGCTTGA | 1029 | 0.4121 | MGVDYYNILKVDRNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYDVRNQSHHSFLSVLSDPQKRAIYDQHGEEGLKDRPPPDSEPSGGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSKRFSSDGGGAFNGFGGNENIFRTYSERGNMLKKPPPVETKLPCSLEELYSGSTRKMKISRTVIDANGRPSPETEILTIEVKPGWKKGTKITFPDKGNQQPNQQAADLVFVIDEKPHDLFKRDSNDLIVSQRVSLAEAIGGTSINLKTLDNRSLCIPVTDIVSPGYELVVANEGMPITKEPGHRGDLRIIFEVKFPTKLTSEQRAGLKRALGGGGA. | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g00872 | 342 | FunFam | Dnaj homolog subfamily b member | 159 | 241 | - | - | |
| Seca4g00872 | 342 | Gene3D | DnaJ domain | 3 | 124 | IPR036869 | - | |
| Seca4g00872 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 246 | 331 | IPR008971 | GO:0006457|GO:0051082 | |
| Seca4g00872 | 342 | Gene3D | - | 242 | 338 | - | - | |
| Seca4g00872 | 342 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Seca4g00872 | 342 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Seca4g00872 | 342 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Seca4g00872 | 342 | PRINTS | DnaJ domain signature | 73 | 92 | IPR001623 | - | |
| Seca4g00872 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 163 | 244 | IPR008971 | GO:0006457|GO:0051082 | |
| Seca4g00872 | 342 | SMART | dnaj_3 | 3 | 73 | IPR001623 | - | |
| Seca4g00872 | 342 | FunFam | DNAJ heat shock family protein | 242 | 337 | - | - | |
| Seca4g00872 | 342 | Gene3D | - | 163 | 241 | - | - | |
| Seca4g00872 | 342 | Pfam | DnaJ domain | 4 | 78 | IPR001623 | - | |
| Seca4g00872 | 342 | CDD | DnaJ | 4 | 56 | IPR001623 | - | |
| Seca4g00872 | 342 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 337 | - | - | |
| Seca4g00872 | 342 | Pfam | DnaJ C terminal domain | 164 | 322 | IPR002939 | - | |
| Seca4g00872 | 342 | CDD | DnaJ_C | 162 | 325 | - | - | |
| Seca4g00872 | 342 | ProSiteProfiles | dnaJ domain profile. | 4 | 81 | IPR001623 | - | |
| Seca4g00872 | 342 | SUPERFAMILY | Chaperone J-domain | 3 | 121 | IPR036869 | - | |
| Seca4g00872 | 342 | MobiDBLite | consensus disorder prediction | 81 | 103 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g00872 | Seca-Chr4 | 14453190 | 14455440 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g00872 | 5 | 162 | C2H2 Transcription Factor Family | AT1G74250 | 30.488 | 1.14e-08 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g00872 | K09510 | - | gmx:100796426 | 496.123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca4g00872 | 4 | 14453190 | 14455440 | Seca4g00872 | 4 | 14453190 | 14455440 | ECH |