Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00867 ATGCACACCAAATCGACACAGTCATCATATCGGGATCGAACGCAAGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAATCAGGATCAGCGCCAAATGGACCGAGCAGTAGTAGTGCTAGTTCATCCAGATCGGAGGAACAACGATCTGCTGTTGCAATGCAATCAGAGTTCAATAAAAGGGCTTCCAAGATTGGCTATGGGATTCATCAAACGTCACAGAAGCTTGCTAAGCTCGCCAAGTTGGCAAAAAGAACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAAGATATTACTGCACTTAACTCTGCGGTTGTTGATCTTCAATTACTCTGCAATTCTAGAAATGAGAGTGGAAACGCTTCTGCCGACACAACTAGCCATTCAACCACGGTTGTGGATGACCTAAAGACCCGATTGATGAGCACCACAAAAGAGTTCAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTACATGAGAATAGAAGACAATTGTTTTCGTCCTCTGCTTCTAAAGAATCTGCAAATCCTTTTGTCCGTCAACGTCCATTAGCTACAAGGACGGCTGCTAGCGCTTCTAATGCCCCTGCACCCCCATGGGCTACTGGGTCTCCGTCTTCATCTCAGTCGCTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAGCAGCAGCAGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAATATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCGTAG 1020 0.4402 MHTKSTQSSYRDRTQEFQSIAERLKKSGSAPNGPSSSSASSSRSEEQRSAVAMQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLCNSRNESGNASADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKESANPFVRQRPLATRTAASASNAPAPPWATGSPSSSQSLPKKQVDGESQPLLQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00867 339 Pfam SNARE domain 283 335 IPR000727 -
Seca4g00867 339 MobiDBLite consensus disorder prediction 1 52 - -
Seca4g00867 339 Gene3D - 51 302 - -
Seca4g00867 339 MobiDBLite consensus disorder prediction 196 238 - -
Seca4g00867 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Seca4g00867 339 MobiDBLite consensus disorder prediction 29 52 - -
Seca4g00867 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Seca4g00867 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca4g00867 339 CDD SNARE_syntaxin5 250 328 - -
Seca4g00867 339 PANTHER SYNTAXIN 51 331 IPR045242 -
Seca4g00867 339 SUPERFAMILY t-snare proteins 54 302 IPR010989 GO:0016020|GO:0016192
Seca4g00867 339 SMART tSNARE_6 242 309 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00867 Seca-Chr4 14366226 14371756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00867 1 339 SNARE and Associated Proteins AT3G24350 65.289 4.80e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00867 K08490 - gmx:100811494 479.174