Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00866 ATGCACGCCAAATCGGCTCAATCATCATTTCGGGATCGGACGCAGGAATTCCATAGCATCGCGGAAAGGTTGAAGAAATCAGCATCAGGATCAAATGGACCGAGCAGCAGTAGTGGTGCTAGTTCATCCAGATCGGAGGAACAGCGATCTGCTGTTGCAATTCAATCAGAGTTCAATAAAAGGGCTTCCAAGATTGGCTATGGGATTCACCAAACATCTCAAAAGCTTGCTAAGCTCGCCAAGTTGGCAAAAAGAACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACAAGTGTTATTAAGCAAGATATTACTGCATTAAACTCTGCGGTTGTGGATCTTCAGCTACTCAGCAACTCTAGAAATGAGAGTGGAAACGTATCTGCCGACACAACTAGCCATTCGACCACGGTTGTGGATGACCTAAAGACCCGATTGATGAGCACCACAAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACATGAAAGTACATGAGAGTAGAAGACAGTTGTTTTCGTCCTCTGCTTCTAAGGATTCTGCAAATCCTTTTGTCCGTCAACGTCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTGATGCCCCTGCACCCCCGTGGGCTACTGGATCACCATCTTCATCTCAGTTGTTTCCCAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAGCAGCAGCAGCAGCAACAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCAGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGTTTTTATGTCTTACTCTTTTGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAAGGGGCACAAGGGGCTTTATTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGTTGATGATCAAGATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1053 0.4378 MHAKSAQSSFRDRTQEFHSIAERLKKSASGSNGPSSSSGASSSRSEEQRSAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHESRRQLFSSSASKDSANPFVRQRPLATRTAASASDAPAPPWATGSPSSSQLFPKKQVDGESQPLLQQQQQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRFLCLTLLIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00866 350 MobiDBLite consensus disorder prediction 170 189 - -
Seca4g00866 350 MobiDBLite consensus disorder prediction 1 52 - -
Seca4g00866 350 Pfam SNARE domain 299 346 IPR000727 -
Seca4g00866 350 SUPERFAMILY t-snare proteins 56 313 IPR010989 GO:0016020|GO:0016192
Seca4g00866 350 Gene3D - 50 313 - -
Seca4g00866 350 MobiDBLite consensus disorder prediction 173 187 - -
Seca4g00866 350 MobiDBLite consensus disorder prediction 196 241 - -
Seca4g00866 350 MobiDBLite consensus disorder prediction 211 241 - -
Seca4g00866 350 PANTHER SYNTAXIN 55 342 IPR045242 -
Seca4g00866 350 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 288 IPR000727 -
Seca4g00866 350 CDD SNARE_syntaxin5 254 339 - -
Seca4g00866 350 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Seca4g00866 350 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g00866 350 SMART tSNARE_6 246 320 IPR000727 -
Seca4g00866 350 MobiDBLite consensus disorder prediction 25 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00866 Seca-Chr4 14357965 14363340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00866 1 350 SNARE and Associated Proteins AT3G24350 65.405 7.88e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00866 K08490 - gmx:100811494 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00866 4 14357965 14363340 Seca4g00866 4 14357965 14363340 ECH