Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00863 ATGGGAGAAGTGGCGGTAATGCACTCTGAGCCTCTGCAGTTTGAATGCAATGACATGAAGCATGTGACTGAGAAAGATGTGTATAATCTACCATCAAATGAAGAACACATTGTTGGGGAAAAATCAAGTCAACCAACAGATCACATAAAGATCGAAGACTTGCAAGAGAGAGGTTATATGGAGTATGGATGTCAACATTACCGGAGAAGATGTCAAATTAGAGCCCCCTGTTGTAATGAGATATTTGATTGCCGCCATTGTCACAATGATGCAAAAAATAATATCAACATTGATCAGAAGCATAGACATGACATTCCCCGCCATCAAATCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAGAACTGTATCAACTGTGGTGTTTGCATGGGCAAGTACTTCTGTGAGACATGTAAGCTTTTTGATGACGATGTATCTAAGCAGCAATACCATTGCAATGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCTACAAATGTGGTTGTTGTTACTCAACTCTGCTGAAAAACAGTCACCTTTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCCTTGAATGAGGTCACTGTTTTACTCTGTGGGCATACAATCCATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCGTGTCCTCTGTGCTCAAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAAATTGCTGCCACACCAATGCCTGAACCATATCTGAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCATGTCCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAATCCTACAACACACGGCAAACAAGAGGCTGA 930 0.4129 MGEVAVMHSEPLQFECNDMKHVTEKDVYNLPSNEEHIVGEKSSQPTDHIKIEDLQERGYMEYGCQHYRRRCQIRAPCCNEIFDCRHCHNDAKNNINIDQKHRHDIPRHQIKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDDVSKQQYHCNGCGICRTGGCENFFHCYKCGCCYSTLLKNSHLCVEGAMHHDCPVCFEYLFESLNEVTVLLCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYLNKMVWILCNDCGKTSHVQFHLVAQKCLNCKSYNTRQTRG. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00863 309 Gene3D - 271 309 - -
Seca4g00863 309 Pfam Ring finger domain 199 242 IPR001841 -
Seca4g00863 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 262 IPR013083 -
Seca4g00863 309 SMART ring_2 200 242 IPR001841 -
Seca4g00863 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Seca4g00863 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 41 308 - -
Seca4g00863 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Seca4g00863 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Seca4g00863 309 SUPERFAMILY RING/U-box 199 248 - -
Seca4g00863 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Seca4g00863 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Seca4g00863 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Seca4g00863 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00863 Seca-Chr4 14308714 14313684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00863 62 305 C2H2 Transcription Factor Family AT3G18290 39.600 2.82e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00863 K10144 - gmx:100812023 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00863 4 14308714 14313684 Seca4g00863 4 14308714 14313684 ECH
Seca4g00863 4 14308714 14313684 Seca4g00863 4 14308714 14313684 PCT