Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00859 ATGTCGCTGCCACCTCTTGTTAGAAGACGTTCAAGTGGCGAAATAAGGAACTTGACCACAGTTTCCAGCAGCCTCTTACCAGCATTTGGCACTACCACTGATGAACGTTACTTGAATCTAAAAAAATATGTCATTGCTCCCTATGATCGCAGATATCGTTTGTGGCAAACGTTCCTAGTGGCATTGGTGGTGTACTCAGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAAATGTCTATTGGGCCACTGTTGATTGCTGATCTCGTTGTAGATGTCTTCTTTGCTGTTGATATAGTCCTAACTTTCTTTGTGGCTTACTTGGATAAATCAACTTATTTCCTCGTTGATAACCATAAGAAGATTGCTACTAGGTATGTCAAAAAGTTACACTTTGCCATGGATCTGGCCTCCACTGTGCCGTTTCAGCAGATATACCAAATTATAACAGGCAAACCACACAGAAACGAGTTCTTTGCTTTCCTAAATTTGCTTAGACTCTGGCGATTGAGGCGTGTTAGCCAACTCTTCTCAAGGATAGAGAAAGACACACGAATTAGCTACTCGGTAGCAAGGTTTTCTAAACTTATATGCGTTACGCTATTTGCAGTGCACTCTGCAGGCTGCATGTATTTTTGGTTGGCTGTTCATCACAAGACACCCGGAAACACATGGATCGGGAAACAAGTAGAGGATTTTAAACATAGGAGCATCTCGTTGGGTTACACTTATTCCATGTACTGGTCTATTGTAACCCTTACCACTGTTGGCTATGGAGATTTACATGCAGAAAATACTACGGAGAAGGCTTTCAATATTTTATATATGCTGTTTAACATCGGCCTCACTGCATATATAATCGGAAACATGACAAATCTGGTGGTTCATAGCTCTATCCGAACCATTGCCATGAGGGATGCCTTCAACAAAATGTTACAATATGCAAGCAAAAGTAGACTCCCAGAAGGTTTGAAGGAGCAAATGTTAGCACACTTACAGTTGAAGTTTAAGACGGCAGAGTTACAGCAAGAAGAAGTGCTACAGGGCCTGCCTAAAGCAATTAGATCCAGTATTGCTCAACATCTTTTCCACAACATAGTTGCAAATGCATATTTATTTAACGGAGTCTCTGATGATTTTGTCACCCAGCTGGTGTCAGAAATGAAAGCAGAATACTACCCATCTAAGGTTGACATCATCCTGCAAAATGAGGTGCCAGCATATTTCTACATTTTAGTCTCTGGATCAGTGGATGTGTTGATATACAAGAATGGATCCGAAAAGGTAAGGTGGAATCTCCCATACAATTGA 1311 0.4134 MSLPPLVRRRSSGEIRNLTTVSSSLLPAFGTTTDERYLNLKKYVIAPYDRRYRLWQTFLVALVVYSAWASPFELAFREMSIGPLLIADLVVDVFFAVDIVLTFFVAYLDKSTYFLVDNHKKIATRYVKKLHFAMDLASTVPFQQIYQIITGKPHRNEFFAFLNLLRLWRLRRVSQLFSRIEKDTRISYSVARFSKLICVTLFAVHSAGCMYFWLAVHHKTPGNTWIGKQVEDFKHRSISLGYTYSMYWSIVTLTTVGYGDLHAENTTEKAFNILYMLFNIGLTAYIIGNMTNLVVHSSIRTIAMRDAFNKMLQYASKSRLPEGLKEQMLAHLQLKFKTAELQQEEVLQGLPKAIRSSIAQHLFHNIVANAYLFNGVSDDFVTQLVSEMKAEYYPSKVDIILQNEVPAYFYILVSGSVDVLIYKNGSEKVRWNLPYN. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00859 436 PANTHER POTASSIUM CHANNEL AKT1 19 429 IPR045319 GO:0005249|GO:0006813
Seca4g00859 436 SUPERFAMILY cAMP-binding domain-like 301 426 IPR018490 -
Seca4g00859 436 Gene3D - 53 296 - -
Seca4g00859 436 CDD CAP_ED 372 429 IPR000595 -
Seca4g00859 436 Gene3D Jelly Rolls 339 432 IPR014710 -
Seca4g00859 436 SUPERFAMILY Voltage-gated potassium channels 47 294 - -
Seca4g00859 436 ProSiteProfiles cAMP/cGMP binding motif profile. 372 429 IPR000595 -
Seca4g00859 436 FunFam Potassium channel KAT3 54 296 - -
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 65 72 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00859 436 Pfam Ion transport protein 53 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00859 Seca-Chr4 14263070 14267099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00859 8 429 Ion Channels AT4G32650 63.507 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00859 K21867 - gmx:100794620 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00859 4 14263070 14267099 Seca4g00859 4 14263070 14267099 ECH