Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00853 ATGGATACACTGAGTGAAGAAATTTTGTATAATATGATGGATAAAGCAGATTTGAATAATTCTGACTCTGGGAAATTAAGAAAGTCTAAATCGAGTGATAAAGATAATGGTCATAGTCAAAACTTACTAGAAGGTTACAAAAGGATTAATGAACTAACAGTTGATGATATTAAGGGTCTTGAATTTGATTCGAAAGAGGATGCATATTATTTCTATTCTGAGTATGCAAAATTTAAAGGATTCGCTGTTAGGAAAGATGATGTTTATCGGGATCGCAATAATTTGATTAGAATGAGGCAAATGGTGTGTAACAGGCAAGGGGAGAGAAGTGAAAAACATTTAAATAGGACTGATAGAATTAGGGAGGAAAAGGCTATTACACGTACTAAATGTCATGCAAGGATTAGGGTTCATTTAGATTATAAGACTAGGAAGTGGAGGGTAGGGTTGTTTGAGCCAAATCACGATCATGACCTGACTCCTGCCAATATGGTGCATTTGCTACCTGCATATCGTGGTTTGAGTGTTGGTGATAAAGCTCAGAATAAAGCAAAAATAGGGGATGGTGATGCATTTGCAGCTTTGTGCTACCTGCAAGCAAAGTCTGACAATAATCCTAAGATGTTTATTAAGTTTACAACCAGTGAAGATGATAGACTCCAAAACTTGTTCTGGGCTGATATTGCACTGCAAAAGTATGAAGTTGATGCTGCTAAGATCTTCACCAGAAATAAGTTCTTTGATGCTAATGGTAAATTTGTTTGTGATTGTCGCTTATTTGAATCATGTGGTATCTCATGCTCTCACATCTTTTGTGCTATGAAGCATGAGCAAGTTGAATCCCTTCCCTCAAATTTGGTCTGTAAAAGATGGACAAAATATGCAAAAGTTCAGAACATATTTGATGTATATGGTGAAGAAGATGACTCATCAAAAAAGGATTTGTTGAGGTCTGGTGCTGTATCTGCAGCCTGTAATAGGCTTAGGAATGTAGTAGATAATAGACAATGCCATTTTGTAAGAAACATTGAAAGAATTCACAAGTTGGCTGATGAAATTGAAATGGAGGATGGTGGTGAAATTAAAAATGGAGATATATCAAAGATTGTTCGTGATCCAACCATAGTCAAAACCAAAGGAGCTCCAAGAAAGAATAAGAAAATGAAGAAAAAGAGAAAGTGTTCTTATTGTAAGCGGTCTGGACACACAATTAGGACGTGCAGTAAGTTCTCCACTCGTGATCAGTTGAATACAGTTGTTGAGGAGGAATCTTCTGTAGAGACAGATGATGAATCAAGGGATGAATCTACATTTCCTGATGTGGAATCATCCAGGCATGGGGTTACAGGTTCTTTGCATCATATTAGTGCATCTGACAAAGTTAACTCTAAGGTTGTTGATAAACAGAAAAAAAGGAAACACAGTGAAATAATCAAAATGACACAGGAGTCTATAAATGAAAAGAGGACATCATATGTGAATTATCCTGAGATGGAGCACAAGGGTCTTGGTCTTAGAAATTTATCGGTTGACAATATTGGGTGTGCATTGGGTAATCAAACTCAATTGTCAATGATGAACCCTACAAGCATGTCTGGTGATATGAACTTCAGACCATCAATGATGCAAGGTTTTGGTCAGGGTTTTATGGGTAGTAGGGTTAATTATATCCCAAATTATCCTCAGTTGCATATGCCAAATTATCCTCAAATGCATATGCATCAAGCAGTATACGGTTCTTCAATGTATCCAGGGATGAATGCAATTGGTAATTATTCACAGTTTACAAACACTCTAAATGAGATTGAGAGGAACACAGCTATTGGAAAAATGGGCTTCAATCCTGCTGGTGGACAACGTTAA 1863 0.3671 MDTLSEEILYNMMDKADLNNSDSGKLRKSKSSDKDNGHSQNLLEGYKRINELTVDDIKGLEFDSKEDAYYFYSEYAKFKGFAVRKDDVYRDRNNLIRMRQMVCNRQGERSEKHLNRTDRIREEKAITRTKCHARIRVHLDYKTRKWRVGLFEPNHDHDLTPANMVHLLPAYRGLSVGDKAQNKAKIGDGDAFAALCYLQAKSDNNPKMFIKFTTSEDDRLQNLFWADIALQKYEVDAAKIFTRNKFFDANGKFVCDCRLFESCGISCSHIFCAMKHEQVESLPSNLVCKRWTKYAKVQNIFDVYGEEDDSSKKDLLRSGAVSAACNRLRNVVDNRQCHFVRNIERIHKLADEIEMEDGGEIKNGDISKIVRDPTIVKTKGAPRKNKKMKKKRKCSYCKRSGHTIRTCSKFSTRDQLNTVVEEESSVETDDESRDESTFPDVESSRHGVTGSLHHISASDKVNSKVVDKQKKRKHSEIIKMTQESINEKRTSYVNYPEMEHKGLGLRNLSVDNIGCALGNQTQLSMMNPTSMSGDMNFRPSMMQGFGQGFMGSRVNYIPNYPQLHMPNYPQMHMHQAVYGSSMYPGMNAIGNYSQFTNTLNEIERNTAIGKMGFNPAGGQR. 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00853 620 SMART 26again6 253 280 IPR006564 GO:0008270
Seca4g00853 620 ProSiteProfiles Zinc finger SWIM-type profile. 233 278 IPR007527 GO:0008270
Seca4g00853 620 MobiDBLite consensus disorder prediction 20 42 - -
Seca4g00853 620 Pfam FAR1 DNA-binding domain 71 160 IPR004330 -
Seca4g00853 620 PANTHER OS01G0519700 PROTEIN 57 180 - -
Seca4g00853 620 MobiDBLite consensus disorder prediction 419 448 - -
Seca4g00853 620 MobiDBLite consensus disorder prediction 20 41 - -
Seca4g00853 620 SUPERFAMILY Retrovirus zinc finger-like domains 380 411 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00853 Seca-Chr4 14020626 14023490 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00853 FAR1 1.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00853 - - ccaj:109792835 200.29