Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00833 ATGTTCTCTTCCTCTACGCACTTCGACGCAACCTCCGCCTTCTCCGGCGGCGGATTCATGACCACTCAGGCCACCGATTCCTCACCAGCTCCCCTAAAAAGTCGCGAAACTCAGGGTTTGGTCGCAGTGACAGTAAAGCAGATAAGTGAGGCTTCTCACTCTGGTGATGAAAAGTCGAATTTCCTAATCAATGGAGTGAATATGAGCAATGTAACCTTGGTTGGAATGGTGTTTGAGAAAGCTGAGAGAAACACTGATGTTAGTTTTGTTTTGGATGATGGAACAGGACGAATCAAATGTCGGAGATGGGTGAATGAGACTTTTGACACAAAGGAAATGGAGGAAATACAAGATGGTATGTATGTTCGCCTTTATGGGCATTTGAGGAGCTTTCAAGGTGTAAGGCAGCTCGTTGCCTTCTCTGTGAGGCCTGTGACGAATTTTGATGAGATATCTTTTCACTTCATTGATTGCATACATAACCATCTCCATTCCAAAGTGAAGGATGAAGGAATCACTCCTGCAAATCCTCCATCATTAGGCTCGTCTTTGAACACTCCTGCCAGAAATGCATCAGATGGATATCAAGCACCATCATCAAATCAGCCATATGCGCAATATAGTGTGGATGGACTCCAAGATTGTGATAAATTGGTTCTTGGCTATCTACAGCAGCACTCAGACATGTCAGATGAAAGGGGAATACATGTTGATGAACTATCTCGACAGCTAAAACTTCCATTGGATAAGATCATGTCCTCTCCGCCTATCTGCTTGTCTTGTTTAGGTTATCTCTCAAGATTCTTGGCGATGACGGATTGGTATACTCCACCATCGATGACTTTCATTACAAGAAAGCTTGATATTTTCATTCATTTTGTGGAATATAAGTGA 894 0.4306 MFSSSTHFDATSAFSGGGFMTTQATDSSPAPLKSRETQGLVAVTVKQISEASHSGDEKSNFLINGVNMSNVTLVGMVFEKAERNTDVSFVLDDGTGRIKCRRWVNETFDTKEMEEIQDGMYVRLYGHLRSFQGVRQLVAFSVRPVTNFDEISFHFIDCIHNHLHSKVKDEGITPANPPSLGSSLNTPARNASDGYQAPSSNQPYAQYSVDGLQDCDKLVLGYLQQHSDMSDERGIHVDELSRQLKLPLDKIMSSPPICLSCLGYLSRFLAMTDWYTPPSMTFITRKLDIFIHFVEYK. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00833 297 CDD RPA2_DBD_D 70 163 - -
Seca4g00833 297 Pfam OB-fold nucleic acid binding domain 71 143 IPR004365 GO:0003676
Seca4g00833 297 FunFam replication protein A 32 kDa subunit A-like 33 167 - -
Seca4g00833 297 SUPERFAMILY Nucleic acid-binding proteins 40 164 IPR012340 -
Seca4g00833 297 Pfam Replication protein A C terminal 181 251 IPR014892 -
Seca4g00833 297 MobiDBLite consensus disorder prediction 169 199 - -
Seca4g00833 297 PANTHER REPLICATION PROTEIN A-RELATED 8 253 IPR040260 -
Seca4g00833 297 Gene3D - 33 166 IPR012340 -
Seca4g00833 297 MobiDBLite consensus disorder prediction 176 199 - -
Seca4g00833 297 PIRSF RPA32 2 254 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00833 Seca-Chr4 13840237 13845744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00833 1 251 Core DNA Replication Machinery Family AT2G24490 46.304 1.64e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00833 K10739 - gmx:100802512 387.111