Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00816 ATGGCGGTGGAACTCATGGGGTTCCCAAAAATGGACGAACAGAAGGCAATTCAAGAGGCTGCATCTGAAGGCTTAAAGGGAATGGAGCACCTCGTTCGTCTCCTCTCTCACCAACCCTCTCATCTTCATTCTGATCTCACCGACATAACCGTTTCCAAGTTCAAAAAACTCATCTCCTTACTCAACCGCACCGGCCACGCCCGTTTCCGCCGCGCTCCAATTCCCTCCCCTTCCCCTTCCCCTTCCTCCACCTCCGCCGCCGCACCTTCTTCCCTCTCTCTACTTCACCCTCTCACCTCAACTCCATCTCCGGCAAACCCTATCGTCGTTAACCACCCTCAGCCGCAGAGTTTGACTCTCGATTTCACAAAACCTAACATCTTGAACTCCAACGCTAAATCCTTGGAGCTTGAGTTCTCCAAGGAAACCTTCAGCGTTTCCTCTAACTCCTCCTTCATCTCCTCCGCCATCACCGGCGACGGCAGCGTTTCTAACGGCAAGCAAGGATCCTCCATCTTCCTCACACCTGCAGTCTCCGGCGGGAAGCCTCCACTCTCAACGCCGTCGTTCAAGAAAAGGTGTCACGAACACTCCGATGACGTCTCCGGGAAGCTCTCCGGCTCCAACAGCAAGTGCCACTGCACCAAGAAAAGCAGGAAAAATAGGGTGAAAAAGACGATAAGAGTTCCGGCGATTAGTTCGAAGATCGCGGATATTCCGTCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGATCGCCGTACCCGAGGGGATATTATAAGTGCAGTACGGTGAGAGGGTGCCCGGCGAGGAAACACGTGGAGAGGGCCACGGACGATCCAGCGATGCTGATCGTAACGTATGAGGGGGAGCACCGTCATGTGATTCAAACCGCGATGCACGAGAACATTTCCGGGGCTGTTGGTTTGGTATTCGAGTCAACGTAA 960 0.5385 MAVELMGFPKMDEQKAIQEAASEGLKGMEHLVRLLSHQPSHLHSDLTDITVSKFKKLISLLNRTGHARFRRAPIPSPSPSPSSTSAAAPSSLSLLHPLTSTPSPANPIVVNHPQPQSLTLDFTKPNILNSNAKSLELEFSKETFSVSSNSSFISSAITGDGSVSNGKQGSSIFLTPAVSGGKPPLSTPSFKKRCHEHSDDVSGKLSGSNSKCHCTKKSRKNRVKKTIRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEGEHRHVIQTAMHENISGAVGLVFEST. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00816 319 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g00816 319 MobiDBLite consensus disorder prediction 83 99 - -
Seca4g00816 319 FunFam WRKY transcription factor 65 224 301 - -
Seca4g00816 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 302 IPR044810 GO:0003700
Seca4g00816 319 Gene3D WRKY domain 228 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g00816 319 MobiDBLite consensus disorder prediction 69 99 - -
Seca4g00816 319 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g00816 319 SUPERFAMILY WRKY DNA-binding domain 238 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g00816 319 MobiDBLite consensus disorder prediction 174 217 - -
Seca4g00816 319 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g00816 319 Pfam Plant zinc cluster domain 191 238 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00816 Seca-Chr4 13578985 13581238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00816 1 318 WRKY Transcription Factor Family AT2G24570 61.493 4.85e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g00816 WRKY 6.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00816 - - gmx:100127394 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00816 4 13578985 13581238 Seca4g00816 4 13578985 13581238 ECH