Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00812 ATGGAGCTAAAAAATGAGAAGCTAGTCAGGTTCTCCAATGATGGAAAACAGAATCTTGAACCTCCTTGGGAAAAGATAGATGCTCACAAATACCATGAGAAGCCATTCCCAGCCTATAAGATTCAGGCAGAATATGAAATTACTAGTGGTGATAATAAGAACAAAATGAATATCAGATTCCCCACTTTTGGAAAGTTTAAGGTTTTCCCAGAGAACCATGAGACATGGAAGAAGAGAATTATTGATCCTGGCAGTGATATGTTTTTGGAGTGGAACAGGGCTTTCCTCTTTGCTTGCATACTAGCATTGTTTGTTGATCCACTGTTTTTCTACCTTCCCTCAGTAGCAAATGATGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTCCGTACATTTGCTGATGTTTTCTATCTGCTGAACATGGCCATAAAGTTCAGGACAGCCTATGTGTCACCAAGTTCAAGGGTTTTTGGAAAGGGTGAACTTGTTATGGATCCAAGGTTGATTGCTAGGCGGTATTTGAGATCAGATTTCTTCCTAGATCTTGTAGCTACACTGCCTCTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGTACTGATTGTTCTGCTTCAATATGCCCCCAGATTATATTTGATTTTCCCTTTAAGTTCTCAGATTATTAAAGCCACTGGTGTGGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACCTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGTAGAAATGAAATCCTCCCTGTAAAATGTGTTCTTAAGTACTTGGATTGCAGTACTTTATACAATGGTGATCGCATGAAGTGGGCAAATACCACTTCTGTGTTTGGTAGCTGCAATCCAGAAAATAGCACCAATTTCAACTATGGAATTTTTGGAAATGCAGTGGAAAATAATGTTGTCTCCTCTGCATTTATAGAGAAGTACCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGTTCCTATGGCCAGGGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATAGTCATGTCTATTCTTGGTCTAGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACCTATTTGCAATCCATTACTGTGAGGCTTGAAGAGTGGAGACTCAAGCGACGTGACACTGAAGAATGGATGAGTCATCGCCAGCTTCCACAACATCTCAGAGAACGTGTCAGAAGATTTGTTCAATACAAATGGCTTGCAACTCGTGGGGTTGATGAAGAAACAATCTTAAGAGGCCTGCCTATAGACCTCCGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCATTTTTCTCTCAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTCAGAGAAGGAGATCCTGTCACAGAGATGCTTTTTATCATTAGAGGGAGACTTGAAAGCTCAACAACAAATGGAGGCAGAACTGGTTTCTTTAACTCCATCACCTTGAGGCCTGGTGATTTTTGTGGAGAAGAACTACTTGCTTGGGCATTGCTTCCAAAATCAACTCTCAATTTGCCTTCTTCTACAAGAACAGTTAGAGCCCTTGTAGAAGTGGAAGCCTTTGCACTCAGAGCAGAAGATCTTAAGTTTGTAGCCAATCAATTTAGACGTCTCCACAGCAAGAAGTTACAGCATACCTTCCGTTTCTACTCTTATCATTGGAGGACATGGGCTGCTTGCTTCATTCAGGCTGCATGGCGCCGGTACAAGAAGAGAGTGTTGGCAAATAGCCTTAGCTTGAGGGAATTCAAGTCCTTCAATGATGGTGAACAAGTGAGGAATCAAATGGAACATGAAGAAGAAGAGAGCAGTGCTGTGACTTCAAACACTGCACAAGTAAAACAGCACCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGCTCCCCAAGTTACAAAAGCCTGAAGAACCAGATTTCTCAGTAGAGCCTGATGAAGATTAG 2193 0.4163 MELKNEKLVRFSNDGKQNLEPPWEKIDAHKYHEKPFPAYKIQAEYEITSGDNKNKMNIRFPTFGKFKVFPENHETWKKRIIDPGSDMFLEWNRAFLFACILALFVDPLFFYLPSVANDGNSSCMATDLNLGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGKGELVMDPRLIARRYLRSDFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYAPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNEILPVKCVLKYLDCSTLYNGDRMKWANTTSVFGSCNPENSTNFNYGIFGNAVENNVVSSAFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAIVMSILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQHLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRVLANSLSLREFKSFNDGEQVRNQMEHEEEESSAVTSNTAQVKQHLGVTILASRFAANTRRGVQKIKDVELPKLQKPEEPDFSVEPDED. 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00812 730 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Seca4g00812 730 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Seca4g00812 730 SUPERFAMILY cAMP-binding domain-like 419 611 IPR018490 -
Seca4g00812 730 MobiDBLite consensus disorder prediction 707 722 - -
Seca4g00812 730 ProSiteProfiles cAMP/cGMP binding motif profile. 489 572 IPR000595 -
Seca4g00812 730 Pfam Cyclic nucleotide-binding domain 512 600 IPR000595 -
Seca4g00812 730 Gene3D Jelly Rolls 487 607 IPR014710 -
Seca4g00812 730 SMART cnmp_10 489 620 IPR000595 -
Seca4g00812 730 PRINTS EAG/ELK/ERG potassium channel family signature 452 459 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00812 730 PRINTS EAG/ELK/ERG potassium channel family signature 358 375 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00812 730 PRINTS EAG/ELK/ERG potassium channel family signature 384 395 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00812 730 PRINTS EAG/ELK/ERG potassium channel family signature 402 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00812 730 PRINTS EAG/ELK/ERG potassium channel family signature 149 158 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g00812 730 SUPERFAMILY Voltage-gated potassium channels 85 411 - -
Seca4g00812 730 Gene3D - 95 415 - -
Seca4g00812 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 723 - -
Seca4g00812 730 Gene3D Helix hairpin bin 417 480 - -
Seca4g00812 730 CDD CAP_ED 489 620 IPR000595 -
Seca4g00812 730 Pfam Ion transport protein 91 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g00812 730 MobiDBLite consensus disorder prediction 707 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00812 Seca-Chr4 13468932 13473749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00812 10 726 Ion Channels AT2G24610 70.994 0.0 1062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00812 K05391 - gmx:100803334 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00812 4 13468932 13473749 Seca4g00812 4 13468932 13473749 ECH