Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00806 ATGTGGGATCATAAAACCGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGACCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAATGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAAGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTCGGCAGCCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGGATTGGGAGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGTCTAATGGAAGACTAATTCGTGGGAAGGCTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCACTTCTGCAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGGTAACTCATCAAGACAGCAGCTTATGTACTATCGCTGA 792 0.4596 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGSLPHDVTQAELHCQFHGLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMSNGRLIRGKAMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTGNSSRQQLMYYR. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00806 263 Gene3D - 73 169 IPR012677 -
Seca4g00806 263 Gene3D - 1 72 IPR012677 -
Seca4g00806 263 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 168 - -
Seca4g00806 263 SUPERFAMILY RNA-binding domain, RBD 1 74 IPR035979 GO:0003676
Seca4g00806 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 165 IPR000504 GO:0003723
Seca4g00806 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 158 IPR000504 GO:0003723
Seca4g00806 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Seca4g00806 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Seca4g00806 263 SMART rrm1_1 92 161 IPR000504 GO:0003723
Seca4g00806 263 SUPERFAMILY RNA-binding domain, RBD 77 169 IPR035979 GO:0003676
Seca4g00806 263 FunFam Oligouridylate-binding protein 1C 68 169 - -
Seca4g00806 263 MobiDBLite consensus disorder prediction 46 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00806 Seca-Chr4 13417203 13422406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00806 6 150 Eukaryotic Initiation Factors Gene Family AT1G22760 31.333 6.93e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00806 K13201 - gmx:100777108 516.153