Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00803 ATGTTTCATAAAACACAATACTGCTGTCTTATTGTGTTCTACATGTTGGCCACTTGTTTTGTGCCATCACTGAGTGACACAAATGCTCAAGTTCTAATGAACTTCAAAGGCTTCTTATCCAATGCTGATGCTTTAAATAACTGGGGGAATGAGTCAATAGGTGTGTGCAGATGGACTGGTATATTATGCTTCAATCAGACATTTCATGGTTTGAGACTTGAAAATATGGGACTAAGTGGCACCATTAATGTTGACATCTTGCTGGAATTGTCCAATTTGAACAGCTTTAGTGTTATTAACAATAACTTTGAGGGCACAATGCCTGCATTCAAGAAGCTTCTGAGCTTAAGGGGATTGTTTCTGAGTAATAACAAATTCTCTGGTGGAATTCCTGATGATGCTTTTGAAGGCATGAGAAGGTTAAAGAGAGTTTTCTTGGCAGAAAATGGGTTCAGTGGTCATATTCCTACATCCCTTGCTCAATTGCCTAGACTTTTGGATGTAGACTTACATGGAAATAGTTTTGAAGGTAACATACCAGAATTTCAACAGAGAGATTTAAGAGTGTTTAATTTATCTAACAACCAATTAAAGGGTCCAATACCAGAAAGCTTAAGCAATGAGGATCCAGGCTCATTTGCAGGGAACAAAGGTCTATGCGGAAAACCTCTTAACAATTTCTGCAGCAGCAACCCACCCTTAAGTTGTCCACATGAAGAAAATGAACATAAGAAAAATAGGAACCTTATTACTATTATTGTAGTGGTGGTTGTGGCTGTCTTGGCCTTGATCCTAGCACTTGTCTTCATCCGTTCCTGTAGAAGAAAAACTACACAAACCGTTTTGGTTGAGGATGCACAAGTACAACAGTCTCAGTGGCAGTCTCAGAACACTAGTGCAGTTATTTCCAGTGAGGCCAAATCTATTGATGTGGCAGGTGCATCCATTAAGAAGGGTAATATAGATGGAGATTTGAACTTTGTTAGGAATAATGAAAAGGTGATGTTTGATTTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTTTGGGAAGTGGCAGCTTTGGATCCACATACAAGGCTATGCTTTTGAATGGACCAGTTGTGGTTGTTAAGAGGTTTAAACACATGAACAATGCAGGGAAAAAAGAGTTCTTTGAGCACATGAAAAGGCTTGGAAGATTGTCACATCCTAATGTACTCCCTCTTGTTGCATTCTATTATGGAAAAGAAGAGAAGCTTTTGGTTCATGAATTCGTTGAAAATGGCAGCTTGGCTAGTCATCTTCATGGTATGACATGTAGACGTGATTTTGAGTTGGACTGGCCAACTCGTTTGAAGATCATAAAAGGGGTAGCCAGGGGTTTAGCTTACCTTTACAAAGAATTCCCTGATCAAAACATACCACATGGCCATCTTAAATCCTCCAATGTTTTGCTAAACCATTCATTTGAGCCTCTTTTGGCAGAGTATGGACTTGCTGTAGTGATGGAGAAGAGGCATGCTCATCAGTTCATGGCAGCATACAAGTCCCCAGAGGTGAGCCAGTATGAGAAGCCTAGTGAGAAGAGTGATGTTTGGTGCTTGGGGATTCTCATATTGGAGATATTGACAGGGAAGTTTCCATCAAATTATCTAAGACATGGGAAGGAAGCAAGTGAAGAATTGGCAATGTGGGTGGACTCAATTGTGAGGGAAGGGTGGAGTGGGGAGGTGTTGGATAAGAGCATTTCAGGGAGAAGGAATGGGGAGGGTGAGATGTTGAAGCTGTTGAGGATTGGGATGGGTTGCTGTGAATGGGGTTTGGAGAATAGGTGGGATTGGAAGGAGGCAGTGGCCAAGATTGAGGAGTTGAAGGAGAGGGATTTTGAAGATGAAAGTGACTCATCCACTTTGAATCAACATGATGATGACTTGTCTTTCTCCCTCACTACTTGA 1935 0.4124 MFHKTQYCCLIVFYMLATCFVPSLSDTNAQVLMNFKGFLSNADALNNWGNESIGVCRWTGILCFNQTFHGLRLENMGLSGTINVDILLELSNLNSFSVINNNFEGTMPAFKKLLSLRGLFLSNNKFSGGIPDDAFEGMRRLKRVFLAENGFSGHIPTSLAQLPRLLDVDLHGNSFEGNIPEFQQRDLRVFNLSNNQLKGPIPESLSNEDPGSFAGNKGLCGKPLNNFCSSNPPLSCPHEENEHKKNRNLITIIVVVVVAVLALILALVFIRSCRRKTTQTVLVEDAQVQQSQWQSQNTSAVISSEAKSIDVAGASIKKGNIDGDLNFVRNNEKVMFDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNNAGKKEFFEHMKRLGRLSHPNVLPLVAFYYGKEEKLLVHEFVENGSLASHLHGMTCRRDFELDWPTRLKIIKGVARGLAYLYKEFPDQNIPHGHLKSSNVLLNHSFEPLLAEYGLAVVMEKRHAHQFMAAYKSPEVSQYEKPSEKSDVWCLGILILEILTGKFPSNYLRHGKEASEELAMWVDSIVREGWSGEVLDKSISGRRNGEGEMLKLLRIGMGCCEWGLENRWDWKEAVAKIEELKERDFEDESDSSTLNQHDDDLSFSLTT. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00803 644 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Seca4g00803 644 ProSiteProfiles Protein kinase domain profile. 343 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00803 644 SUPERFAMILY Protein kinase-like (PK-like) 347 618 IPR011009 -
Seca4g00803 644 FunFam Pollen receptor-like kinase 1 419 628 - -
Seca4g00803 644 Pfam Protein kinase domain 346 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00803 644 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Seca4g00803 644 Gene3D Ribonuclease Inhibitor 185 228 IPR032675 -
Seca4g00803 644 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 621 IPR046959 -
Seca4g00803 644 MobiDBLite consensus disorder prediction 620 644 - -
Seca4g00803 644 Gene3D Transferase(Phosphotransferase) domain 1 419 639 - -
Seca4g00803 644 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Seca4g00803 644 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Seca4g00803 644 SUPERFAMILY L domain-like 29 207 - -
Seca4g00803 644 FunFam pollen receptor-like kinase 1 312 418 - -
Seca4g00803 644 Gene3D Phosphorylase Kinase; domain 1 316 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00803 Seca-Chr4 13377338 13380646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00803 9 639 Receptor kinase-like Gene Family AT5G35390 46.501 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g00803 Pkinase 4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00803 - - gmx:100803999 901.353