Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00796 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGAAGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATACATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGAGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAATCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAGAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTCTGGGCAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAAACAAGTACAACAGACCTCTAGTGATTTTCTCCGGTTGCAATCATCATTCACAGACTGTTATCTTTGGTTGTGCCTTGGTGAGTGATGAAACAATTGATACTTATAAGTGGCTGTTAGAATCCTTTTTAGATGCTATGTGGAATAAACATCCTAAAGCTGTGGTGACAGATGGTGATGGGGCTATGAGGGAGGCGATCAAGCAAGTTTTTCCAAATGCAACCCATAGACTCTGTGCGTGGCACTTACATAAGAATGCATGTGAGAATGTGAAGAATTCCCCATTCTTAGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTGGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTAG 1467 0.3681 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVEEDLTYEQYKSIIDLTANDVRGMEFGSDEHTCKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKERLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTILSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTRKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGKLKNLFWADEVSRSDFQCFGDVLAFDTTYKKNKYNRPLVIFSGCNHHSQTVIFGCALVSDETIDTYKWLLESFLDAMWNKHPKAVVTDGDGAMREAIKQVFPNATHRLCAWHLHKNACENVKNSPFLGDFKTAMYANFTPEKFENFWQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCF. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00796 488 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Seca4g00796 488 Pfam MULE transposase domain 276 370 IPR018289 -
Seca4g00796 488 PANTHER OS01G0519700 PROTEIN 51 487 - -
Seca4g00796 488 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00796 Seca-Chr4 13300503 13301969 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00796 MULE 2.4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00796 - - ccaj:109792835 668.307