Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00788 ATGGCCAATTCTTCAAAAACAAGCAGAGGTAACAACAGCATATCTGAACGTGAGGGAGGATCAAGCAACATGGTTCCTAAAGGCTATCTAGCTGTTTGTGTTGGTGTGGACCTTAACAGGTTTGTTATACCAACGGAGTATTTGGGTCATCAGGCCTTTCATGTGTTACTCAGAGAAGCAGAGGAGGAATTTGGGTTTGAACAAACTGGTGTTCTGAGGATACCTTGTGAAGTGTCTGTGTTTGAGAATATCTTGAAGATAGTAGAAGGAAAGGACAAGTTTTCTACACATAAATGTAGAATTAGCATTGAAAAGATGATGGGATACTGTTCCTCAAACCAGCTTGCTTATTCTCATCAACCACAAAGTCCAATGTGCAGATAG 384 0.4062 MANSSKTSRGNNSISEREGGSSNMVPKGYLAVCVGVDLNRFVIPTEYLGHQAFHVLLREAEEEFGFEQTGVLRIPCEVSVFENILKIVEGKDKFSTHKCRISIEKMMGYCSSNQLAYSHQPQSPMCR. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00788 127 Pfam Auxin responsive protein 15 87 IPR003676 GO:0009733
Seca4g00788 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 84 IPR003676 GO:0009733
Seca4g00788 127 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00788 Seca-Chr4 13214406 13214789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00788 21 127 Calmodulin-binding Proteins AT4G31320 58.772 1.29e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00788 K14488 - gmx:100500385 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00788 4 13214406 13214789 Seca4g00788 4 13214406 13214789 ECH