Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00782 ATGACTGCTACATTTGATTCTCAGTCATCACTTTGTGGCACTGGTAATGTTGGCAGCCCGGTTTCAGCTAACAAACCAAACACCAGCAGAGAGAATCATACCAAAGGAGCTACAAGTGGTTCCTCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAGAGCACAGATCTAGTTGATGTGAAGCGCCTTAGAAGGAAGGCATCTAATCGTGACTCTGCTAGGAGGTCAAGAAAAAGAAAACAAGAGCATTTGGCTGAACTTGAGACACAGGCGGAAAAATTGAAACGGGAAAATGAAACCCTGTACAAGCAGTTTACGGATGCTAGTCAACTATTTCGTAATGCTGATACGGATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTCAGGATATGGTGATGACTCGGAGCTCTTTGAGCACCTTAAACAATCAGCTTCTTCAGACTGTGTGTCAATTGAGCACACCAGCTGTACAACTCAACATGCCACATGTCTCACCAACCATCACTGTCCATGGAAATGATGCCTCATATGGTGGTGTCAATACAATTACTGGTGAACAGGATTCAACTCTTGGGTTTGGAAACTTGGATATCACTTACAACGACACCAATAATGGGAATGCTACGAGCTTTGCAGCGACTATGTGGCCGTGA 678 0.4425 MTATFDSQSSLCGTGNVGSPVSANKPNTSRENHTKGATSGSSDEDDEAGPCEQSTDLVDVKRLRRKASNRDSARRSRKRKQEHLAELETQAEKLKRENETLYKQFTDASQLFRNADTDNRVLKSDVEALRAKVKLAQDMVMTRSSLSTLNNQLLQTVCQLSTPAVQLNMPHVSPTITVHGNDASYGGVNTITGEQDSTLGFGNLDITYNDTNNGNATSFAATMWP. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00782 225 CDD bZIP_plant_GBF1 62 113 IPR045314 GO:0003700|GO:0006355
Seca4g00782 225 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 64 79 IPR004827 GO:0003700|GO:0006355
Seca4g00782 225 SUPERFAMILY Leucine zipper domain 60 109 IPR046347 GO:0003700|GO:0006355
Seca4g00782 225 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 59 104 IPR004827 GO:0003700|GO:0006355
Seca4g00782 225 MobiDBLite consensus disorder prediction 1 83 - -
Seca4g00782 225 Coils Coil 70 111 - -
Seca4g00782 225 Coils Coil 119 139 - -
Seca4g00782 225 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g00782 225 FunFam BZIP transcription factor 59 110 - -
Seca4g00782 225 Pfam bZIP transcription factor 60 104 IPR004827 GO:0003700|GO:0006355
Seca4g00782 225 Gene3D - 60 116 - -
Seca4g00782 225 SMART brlzneu 57 121 IPR004827 GO:0003700|GO:0006355
Seca4g00782 225 PANTHER BASIC LEUCINE ZIPPER 63 3 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00782 Seca-Chr4 13116260 13120368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00782 6 225 bZIP Transcription Factor Family AT5G24800 47.598 5.41e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g00782 bZIP_1 2.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00782 K25784 - gmx:780555 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00782 4 13116260 13120368 Seca4g00782 4 13116260 13120368 ECH